{"id":"W2538477012","doi":"10.1017/s0950268816002351","title":"Comparative genomic fingerprinting of <i>Campylobacter</i>: application in routine public health surveillance and epidemiological investigations","year":2016,"lang":"en","type":"article","venue":"Epidemiology and Infection","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; Nova Scotia Health Authority; Nova Scotia Department of Health and Wellness; Public Health Agency of Canada","funders":"Public Health Agency of Canada","keywords":"Subtyping; Campylobacteriosis; Campylobacter; Epidemiology; Outbreak; Public health; Molecular epidemiology; Environmental health; Medicine; Biology; Genotype; Virology; Genetics; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005218232,0.0001619251,0.0007531042,0.00003991412,0.0001433996,0.00000397628,0.00007397133,0.0002082381,0.00002424032],"category_scores_gemma":[0.00254554,0.00006392453,0.00005452032,0.0002186523,0.000417433,0.0001261108,0.00008300375,0.0001558228,0.000006554079],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004721114,"about_ca_system_score_gemma":0.0000142379,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001436152,"about_ca_topic_score_gemma":0.001902098,"domain_scores_codex":[0.9961575,0.002143285,0.0008083712,0.000457437,0.00003245136,0.0004009744],"domain_scores_gemma":[0.9938487,0.005355428,0.0005303298,0.00007224638,0.0000467779,0.0001465168],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00001282632,0.00002878923,0.934543,0.000007581758,0.000008853377,7.55192e-8,0.00005799324,0.000004866594,0.02290582,0.004466812,0.00006160643,0.03790184],"study_design_scores_gemma":[0.0001745687,0.0002020171,0.9880875,0.00002305846,0.000002087495,0.00001563013,0.00002409589,0.0002262396,0.0000600048,0.008572086,0.002502025,0.0001107393],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9818239,0.000630447,0.001280719,0.01577892,0.0000685128,0.000233911,0.00001528584,0.0000432361,0.0001251023],"genre_scores_gemma":[0.9966877,0.001605316,0.0003226045,0.001196538,0.00009888587,0.00004097678,0.00003725376,9.40569e-7,0.000009787352],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05354451,"threshold_uncertainty_score":0.3047432,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09348821873863439,"score_gpt":0.3104545269785471,"score_spread":0.2169663082399127,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}