{"id":"W2539371507","doi":"10.1093/femsec/fiw214","title":"Microbiome analysis shows enrichment for specific bacteria in separate anatomical regions of the deep-sea carnivorous sponge<i>Chondrocladia grandis</i>","year":2016,"lang":"en","type":"article","venue":"FEMS Microbiology Ecology","topic":"Marine Sponges and Natural Products","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"Office of Marine and Aviation Operations; National Marine Fisheries Service; Natural Sciences and Engineering Research Council of Canada; National Museum of Natural History; Dalhousie University; National Oceanic and Atmospheric Administration; Smithsonian Institution","keywords":"Biology; Roseobacter; Sponge; Microbiome; Bacteria; Symbiotic bacteria; Symbiosis; 16S ribosomal RNA; Metagenomics; Ecology; Abundance (ecology); Proteobacteria; Benthic zone; Zoology; Botany; Phylogenetics; Gene; Clade; Paleontology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003270165,0.0002815381,0.0005664778,0.0002303232,0.00009179834,0.00000703599,0.0005236171,0.0005016841,0.0001354091],"category_scores_gemma":[0.0000849137,0.0001762567,0.0003802863,0.0004157533,0.0004211191,0.000005509832,0.0002913295,0.0001393413,0.00001196219],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008056622,"about_ca_system_score_gemma":0.00009137286,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004516106,"about_ca_topic_score_gemma":0.004964566,"domain_scores_codex":[0.9978322,0.0002695412,0.0005156859,0.0007614708,0.00003004171,0.0005910278],"domain_scores_gemma":[0.9987769,0.00009522263,0.0002635523,0.0006758707,0.0001180381,0.00007048129],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004030888,0.0001028499,0.0544026,0.00001115934,0.0003475946,0.000003082314,0.00002557558,0.00001122859,0.9385075,0.0001344554,0.005644417,0.0004064315],"study_design_scores_gemma":[0.003761903,0.0006501362,0.1413941,0.00001447779,0.0003181919,0.0001569152,0.00002914968,0.00001111665,0.5247064,0.0002573167,0.328097,0.0006032608],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956906,0.0008395734,0.0001824903,0.001332118,0.0008244818,0.000645617,0.0004038726,0.000009482347,0.00007173243],"genre_scores_gemma":[0.9960762,0.0003768356,0.0003715534,0.0003173197,0.000157284,0.00006245133,0.0004912743,0.00002355366,0.002123546],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4138011,"threshold_uncertainty_score":0.7187541,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006493880313697385,"score_gpt":0.2246289615145678,"score_spread":0.2181350812008705,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}