{"id":"W2539790561","doi":"10.18632/oncotarget.12818","title":"Association of breast cancer risk with genetic variants showing differential allelic expression: Identification of a novel breast cancer susceptibility locus at 4q21","year":2016,"lang":"en","type":"article","venue":"Oncotarget","topic":"BRCA gene mutations in cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University and Génome Québec Innovation Centre; McGill University; Royal Victoria Hospital; University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; Université Laval; Centre hospitalier universitaire de Québec","funders":"Medical Research and Materiel Command; Universitätsklinikum Hamburg-Eppendorf; Biomedical Research Council; Medical Research Council; Canadian Institutes of Health Research; U.S. Army; National Institutes of Health; Akershus Universitetssykehus; Deutschen Konsortium für Translationale Krebsforschung; Rheinische Friedrich-Wilhelms-Universität Bonn; Ministero dello Sviluppo Economico; Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail; Fondazione Italiana per la Ricerca sul Cancro; National Health and Medical Research Council; Oulun Yliopisto; Deutsche Krebshilfe; Medizinischen Hochschule Hannover; Norges Forskningsråd; Institut National Du Cancer; Leids Universitair Medisch Centrum; Universitetet i Bergen; KWF Kankerbestrijding; Stockholms Läns Landsting; Medisinske fakultet, Universitetet i Oslo; Ligue Contre le Cancer; Kuopion Yliopistollinen Sairaala; Karolinska Institutet; Instituto de Salud Carlos III; National Research Foundation of Korea; Ministry of Education, Science and Technology; Bundesministerium für Bildung und Forschung; Ministerio de Economía y Competitividad; Deutsche Gesetzliche Unfallversicherung; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Cancer Australia; Agence Nationale de la Recherche; Robert Bosch Stiftung; National Institute for Health and Care Research; National Research Foundation; Cancer Council South Australia; Fonds Wetenschappelijk Onderzoek; Cancerfonden; National Cancer Institute; Cancer Institute NSW; National Breast Cancer Foundation; European Commission; Academy of Finland; King's College London; National Medical Research Council; Eberhard Karls Universität Tübingen; Fondation du cancer du sein du Québec; Génome Québec; Itä-Suomen Yliopisto; Genome Canada; Ministère du Développement Économique, de l’Innovation et de l’Exportation; Lon V. Smith Foundation; Agency for Science, Technology and Research; McGill University Health Centre; University of California, Irvine; Kreftforeningen; David F. and Margaret T. Grohne Family Foundation; Cancer Council Tasmania; Francis Crick Institute; Herlev Hospital; University of Southern California; Associazione Italiana per la Ricerca sul Cancro; Beckman Research Institute, City of Hope; Cancer Research UK; Deutsches Krebsforschungszentrum; Breast Cancer Research Foundation; McGill University; Fondation de France; NIHR Biomedical Research Centre, Royal Marsden NHS Foundation Trust/Institute of Cancer Research; University of Cambridge; Government of Canada; Helsingin ja Uudenmaan Sairaanhoitopiiri; Cancer Council NSW; Susan G. Komen for the Cure; Universitetet i Oslo; Sundhed og Sygdom, Det Frie Forskningsråd; Cancer Council Victoria; California Department of Public Health; Haukeland Universitetssjukehus; U.S. Department of Health and Human Services","keywords":"Breast cancer; Biology; Single-nucleotide polymorphism; Genetics; Allele; Locus (genetics); Gene; Cancer; Cancer research; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002096576,0.000185053,0.000240257,0.00004595477,0.00008518479,0.00001101768,0.0002106336,0.0001866205,0.0005620164],"category_scores_gemma":[0.00004278076,0.0001353496,0.00009727899,0.000126835,0.0001020983,0.00001438679,0.0001168714,0.00006530205,0.000002902825],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004578197,"about_ca_system_score_gemma":0.0002995415,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005123184,"about_ca_topic_score_gemma":0.00154941,"domain_scores_codex":[0.9983687,0.00009965419,0.0004489043,0.0004889015,0.0003479432,0.0002458557],"domain_scores_gemma":[0.9982625,0.00002883016,0.000686928,0.0004938618,0.0004584929,0.00006937377],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000227149,0.0001250212,0.3404419,0.00002740785,0.0001451731,1.778702e-7,0.00006693934,0.0003358792,0.6563421,0.000001179027,0.0008815163,0.001405507],"study_design_scores_gemma":[0.001363305,0.00004534369,0.661606,0.00008670527,0.0001084422,0.000006855209,0.00001976789,0.0001056875,0.3362388,0.0000111826,0.000244408,0.0001635412],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9857728,0.000328244,0.01000477,0.000514954,0.0003168359,0.0002351039,0.002792955,0.000009384222,0.00002493079],"genre_scores_gemma":[0.9973811,0.0005543669,0.0006464195,0.00002142767,0.0003294458,0.00009969139,0.00005666674,0.00003188537,0.0008789901],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3211641,"threshold_uncertainty_score":0.6153685,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008352083454735046,"score_gpt":0.2547522576078849,"score_spread":0.2464001741531499,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). 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