{"id":"W2539790561","doi":"10.18632/oncotarget.12818","title":"Association of breast cancer risk with genetic variants showing differential allelic expression: Identification of a novel breast cancer susceptibility locus at 4q21","year":2016,"lang":"en","type":"article","venue":"Oncotarget","topic":"BRCA gene mutations in cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University and Génome Québec Innovation Centre; McGill University; Royal Victoria Hospital; University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; Université Laval; Centre hospitalier universitaire de Québec","funders":"Medical Research and Materiel Command; Universitätsklinikum Hamburg-Eppendorf; Biomedical Research Council; Medical Research Council; Canadian Institutes of Health Research; U.S. Army; National Institutes of Health; Akershus Universitetssykehus; Deutschen Konsortium für Translationale Krebsforschung; Rheinische Friedrich-Wilhelms-Universität Bonn; Ministero dello Sviluppo Economico; Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail; Fondazione Italiana per la Ricerca sul Cancro; National Health and Medical Research Council; Oulun Yliopisto; Deutsche Krebshilfe; Medizinischen Hochschule Hannover; Norges Forskningsråd; Institut National Du Cancer; Leids Universitair Medisch Centrum; Universitetet i Bergen; KWF Kankerbestrijding; Stockholms Läns Landsting; Medisinske fakultet, Universitetet i Oslo; Ligue Contre le Cancer; Kuopion Yliopistollinen Sairaala; Karolinska Institutet; Instituto de Salud Carlos III; National Research Foundation of Korea; Ministry of Education, Science and Technology; Bundesministerium für Bildung und Forschung; Ministerio de Economía y Competitividad; Deutsche Gesetzliche Unfallversicherung; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Cancer Australia; Agence Nationale de la Recherche; Robert Bosch Stiftung; National Institute for Health and Care Research; National Research Foundation; Cancer Council South Australia; Fonds Wetenschappelijk Onderzoek; Cancerfonden; National Cancer Institute; Cancer Institute NSW; National Breast Cancer Foundation; European Commission; Academy of Finland; King's College London; National Medical Research Council; Eberhard Karls Universität Tübingen; Fondation du cancer du sein du Québec; Génome Québec; Itä-Suomen Yliopisto; Genome Canada; Ministère du Développement Économique, de l’Innovation et de l’Exportation; Lon V. Smith Foundation; Agency for Science, Technology and Research; McGill University Health Centre; University of California, Irvine; Kreftforeningen; David F. and Margaret T. Grohne Family Foundation; Cancer Council Tasmania; Francis Crick Institute; Herlev Hospital; University of Southern California; Associazione Italiana per la Ricerca sul Cancro; Beckman Research Institute, City of Hope; Cancer Research UK; Deutsches Krebsforschungszentrum; Breast Cancer Research Foundation; McGill University; Fondation de France; NIHR Biomedical Research Centre, Royal Marsden NHS Foundation Trust/Institute of Cancer Research; University of Cambridge; Government of Canada; Helsingin ja Uudenmaan Sairaanhoitopiiri; Cancer Council NSW; Susan G. Komen for the Cure; Universitetet i Oslo; Sundhed og Sygdom, Det Frie Forskningsråd; Cancer Council Victoria; California Department of Public Health; Haukeland Universitetssjukehus; U.S. Department of Health and Human Services","keywords":"Breast cancer; Biology; Single-nucleotide polymorphism; Genetics; Allele; Locus (genetics); Gene; Cancer; Cancer research; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003500654,0.0005779432,0.0004864768,0.001148218,0.000475677,0.0008725214,0.0004752132,0.0008242527,0.006427984],"category_scores_gemma":[0.001681382,0.0002459736,0.0006187594,0.001156456,0.0003065004,0.0001250189,0.0005005928,0.0005835331,0.0008359968],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002917214,"about_ca_system_score_gemma":0.0003176887,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004632268,"about_ca_topic_score_gemma":0.004423776,"domain_scores_codex":[0.999626,0.0000637546,0.00003409467,0.0001036602,0.0001090807,0.00006343909],"domain_scores_gemma":[0.9992519,0.0002340826,0.0002949561,0.00005970601,0.00008108735,0.0000782421],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001829697,0.0001527034,0.8575251,0.00011025,0.0004697292,0.005545089,0.0004303283,0.0009527905,0.0937749,0.0004762562,0.0031086,0.0356246],"study_design_scores_gemma":[0.0001200319,0.0002010063,0.9770356,0.00004640601,0.0004863812,0.009070494,0.0003233626,0.001682394,0.005878252,0.0005301478,0.004585534,0.0000404104],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948383,0.001379913,0.0006848617,0.0005963213,0.00007313627,0.00001462459,0.0008172229,0.0000424408,0.001553088],"genre_scores_gemma":[0.9947466,0.001003443,0.00103137,0.000176211,0.0001129957,0.00001919899,0.0009676993,0.00003863535,0.001903757],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006427984,"threshold_uncertainty_score":0.02150369,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008352083454735046,"score_gpt":0.2547522576078849,"score_spread":0.2464001741531499,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). 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