{"id":"W2543261583","doi":"10.1093/gbe/evw254","title":"Comparative Phylogenomic Assessment of Mitochondrial Introgression among Several Species of Chipmunks ( <i>TAMIAS</i> )","year":2016,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Division of Environmental Biology; National Center for Research Resources; Natural Sciences and Engineering Research Council of Canada; Gordon and Betty Moore Foundation; Office of Experimental Program to Stimulate Competitive Research; National Science Foundation; National Institutes of Health; University of Montana","keywords":"Introgression; Biology; Mitochondrial DNA; Evolutionary biology; Genome; Phylogenetic tree; Genetics; Natural selection; Reproductive isolation; Selection (genetic algorithm); Gene; Population","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006411163,0.0000907925,0.0001755459,0.00003464785,0.00005825177,0.000001889352,0.00007994645,0.0001729514,0.00003856332],"category_scores_gemma":[0.000009140432,0.00006540384,0.00004906466,0.00003634562,0.0003388697,0.000003939339,0.00008872803,0.00003743663,0.000001032124],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001311878,"about_ca_system_score_gemma":0.00003333115,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001488976,"about_ca_topic_score_gemma":0.00001472582,"domain_scores_codex":[0.9993994,0.00008525016,0.0001723357,0.0001872125,0.00004403833,0.0001117927],"domain_scores_gemma":[0.9996071,0.0000105488,0.0001577411,0.0001276391,0.0000642242,0.00003273299],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007951426,0.00001252616,0.254867,0.000006272487,0.00003155495,5.594467e-8,0.00005452296,0.00003727201,0.7441603,0.0005632135,0.00005825211,0.0001295636],"study_design_scores_gemma":[0.0006806058,0.0003027592,0.9676981,0.000009313192,0.00001927154,0.000002207285,0.0000697635,0.00001206461,0.02897346,0.0004010341,0.001743828,0.00008757743],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9899506,0.0003746412,0.008845814,0.00003398922,0.0002059636,0.0001094707,0.0001125186,0.000002891101,0.0003641438],"genre_scores_gemma":[0.9981854,0.0001041348,0.001239208,0.000009918493,0.0001598503,0.000002265306,0.0001081052,0.000002760422,0.0001883702],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7151868,"threshold_uncertainty_score":0.2667091,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01057532769565488,"score_gpt":0.2557178117058302,"score_spread":0.2451424840101754,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}