{"id":"W2543687813","doi":"10.1089/fpd.2016.2164","title":"Monitoring Seven Potentially Pathogenic <i>Escherichia coli</i> Serogroups in a Closed Herd of Beef Cattle from Weaning to Finishing Phases","year":2016,"lang":"en","type":"article","venue":"Foodborne Pathogens and Disease","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture Food and Rural Development; Agriculture and Agri-Food Canada","funders":"Alberta Innovates; Government of Canada; U.S. Department of Agriculture","keywords":"Virulence; STX2; Pulsed-field gel electrophoresis; Feces; Microbiology; Biology; Herd; Escherichia coli; Polymerase chain reaction; Serotype; Beef cattle; Immunomagnetic separation; Shiga toxin; Weaning; Veterinary medicine; Virology; Gene; Animal science; Genotype; Medicine; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006644318,0.0004151887,0.000312309,0.0005539305,0.000475214,0.0006283745,0.0003071759,0.0003776295,0.000249995],"category_scores_gemma":[0.0006891668,0.0002026636,0.0002136682,0.0004014405,0.0003733546,0.0003104885,0.0002989618,0.0002913112,0.0000843],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006325195,"about_ca_system_score_gemma":0.0004008145,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008347833,"about_ca_topic_score_gemma":0.01669405,"domain_scores_codex":[0.9995234,0.00008471105,0.00003467112,0.0001324575,0.000102177,0.0001224832],"domain_scores_gemma":[0.9990779,0.0001572405,0.0003258463,0.00002140729,0.0001639134,0.00025369],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004117382,0.0001682618,0.9197963,0.0000405612,0.00003479243,0.0001962535,0.0007745442,0.0001462052,0.07273213,0.00001190723,0.00003555273,0.005651728],"study_design_scores_gemma":[0.000004558643,0.0007944015,0.9951,0.00000744143,0.00002255701,0.0001586266,0.0004130177,0.0002147004,0.003146733,0.000006402213,0.0001274334,0.000004232791],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9998029,0.00002557393,0.00008526936,0.000002548641,8.20445e-7,0.00000301899,0.00002829437,0.000001520124,0.0000500664],"genre_scores_gemma":[0.998895,0.00006333855,0.00061023,0.00001655881,0.000003280961,0.000007967586,0.000291287,0.000001269577,0.0001109933],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008347833,"threshold_uncertainty_score":0.01659852,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0146510459339021,"score_gpt":0.2610132841551669,"score_spread":0.2463622382212649,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}