{"id":"W2543855063","doi":"10.1093/nar/gkw1030","title":"IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses","year":2016,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":211,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; Genome British Columbia; University of British Columbia","funders":"Office of Science; Joint Genome Institute; U.S. Department of Energy","keywords":"Metagenomics; Biology; Contig; Genome; Computational biology; Genomics; Database; Metadata; DNA sequencing; Phylum; Genetics; Gene; Computer science; World Wide Web","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003211688,0.0001021388,0.0001324091,0.00005222369,0.0001848332,0.00005036498,0.0001820399,0.00007275127,0.002267905],"category_scores_gemma":[0.0002014664,0.00006236074,0.00002718697,0.0001980261,0.0007927035,0.0004394054,0.0005291639,0.0001589539,0.0001934667],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006770974,"about_ca_system_score_gemma":0.000009863051,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006547381,"about_ca_topic_score_gemma":0.0003025354,"domain_scores_codex":[0.998861,0.0001057121,0.0001585982,0.0003192975,0.0002642752,0.0002911806],"domain_scores_gemma":[0.9994078,0.0001096809,0.00004003869,0.0002688395,0.00003380906,0.0001398493],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006276308,0.0000445956,0.006809469,0.00001239478,0.00001017984,0.000004386264,0.0003513178,3.921554e-8,0.9771749,0.00008838554,0.006051593,0.009389917],"study_design_scores_gemma":[0.001101274,0.0003087461,0.2221848,0.0001854808,0.00001987253,0.00005658033,0.0006635459,0.000009646422,0.4758889,0.0002707121,0.2990239,0.0002866235],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956363,0.0001204772,0.00003176165,0.0004842872,0.00003971751,0.0001705284,0.0001278576,0.00001965689,0.003369389],"genre_scores_gemma":[0.9960923,0.0005774677,0.0008574462,0.00009505653,0.00003549645,0.00001022188,0.000003019521,0.00001359205,0.002315464],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5012861,"threshold_uncertainty_score":0.9986442,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04826520707238956,"score_gpt":0.3365783181819619,"score_spread":0.2883131111095724,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}