{"id":"W2544696205","doi":"10.1038/ng.3704","title":"Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages","year":2016,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":481,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario","funders":"National Institute of Allergy and Infectious Diseases; Francis Crick Institute; Wellcome Trust; National Natural Science Foundation of China; Universität Basel; Deutsches Zentrum für Infektionsforschung; National Institutes of Health; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Novartis Foundation; SystemsX.ch; World Health Organization; National Science Foundation","keywords":"Generalist and specialist species; Biology; Lineage (genetic); Obligate; Mycobacterium tuberculosis; Tuberculosis; Population; Evolutionary biology; Niche; Genetics; Gene; Ecology; Demography","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000376436,0.0003571637,0.0004341545,0.001200476,0.000375737,0.0005960168,0.0001910256,0.0004035152,0.0009616819],"category_scores_gemma":[0.0008203932,0.0002004663,0.0003000268,0.001076062,0.0003341782,0.0003531185,0.0006258624,0.0003094489,0.0002839643],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002320521,"about_ca_system_score_gemma":0.0001539828,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002111495,"about_ca_topic_score_gemma":0.003769876,"domain_scores_codex":[0.9996369,0.00007318731,0.00002808987,0.0001360338,0.0000423138,0.0000834352],"domain_scores_gemma":[0.9995493,0.00009101259,0.0001916191,0.00006438464,0.00005913565,0.00004448995],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004970653,0.00002981005,0.8969543,0.00005314399,0.0001858335,0.0006152368,0.0010372,0.0003861287,0.07678558,0.0001909654,0.0004227953,0.02284203],"study_design_scores_gemma":[0.00002448997,0.0001670177,0.9879407,0.00002954196,0.0001240251,0.002666646,0.0007970417,0.000538258,0.003240802,0.000470238,0.003985405,0.00001581165],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998804,0.0003027867,0.0003050844,0.00003679808,0.000001965309,0.00000581297,0.0001618714,0.000006689233,0.0003749279],"genre_scores_gemma":[0.9979718,0.0003360044,0.0007004763,0.00006726936,0.00001001833,0.000008310147,0.0006407505,0.00001044943,0.0002549207],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002111495,"threshold_uncertainty_score":0.004198432,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0126428558024797,"score_gpt":0.2990079224188562,"score_spread":0.2863650666163765,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}