{"id":"W2545180100","doi":"10.1128/jb.00696-16","title":"Unique Regulation of the DosR Regulon in the Beijing Lineage of Mycobacterium tuberculosis","year":2016,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":51,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Regulon; Mycobacterium tuberculosis; Biology; Lineage (genetic); Genetics; SNP; Beijing; Tuberculosis; Single-nucleotide polymorphism; Gene; Virulence; Computational biology; Phenotype; Mutant; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001131902,0.000180302,0.0002548331,0.000293842,0.0001399342,0.0002206667,0.0001415521,0.0001962742,0.0005809399],"category_scores_gemma":[0.0002151391,0.0001191263,0.0001405247,0.0001786796,0.000285926,0.00009957836,0.0003430015,0.0001892951,0.0001941334],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001731597,"about_ca_system_score_gemma":0.0001245018,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004427575,"about_ca_topic_score_gemma":0.0008552028,"domain_scores_codex":[0.999801,0.00003147585,0.00002060643,0.00005098453,0.00006583967,0.00003013897],"domain_scores_gemma":[0.999845,0.00002068527,0.00005914536,0.00002574478,0.00002119854,0.0000281368],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003748415,0.000007944112,0.003158722,0.00001204779,0.000002296421,0.0000768048,0.00004334264,0.00002640263,0.9957564,0.00003292727,0.000008883758,0.0008367467],"study_design_scores_gemma":[0.00002542586,0.0003944264,0.5744624,0.00001988559,0.00003531607,0.002770774,0.0003112358,0.001359535,0.4184539,0.0003076261,0.001830871,0.00002871149],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988847,0.000197945,0.0002488609,0.00002579139,0.000002621902,0.000004855208,0.0000948476,0.00001039524,0.0005300234],"genre_scores_gemma":[0.9989956,0.00007789463,0.0003612457,0.00002661503,0.000003429771,0.000007811167,0.0001685917,0.000007385646,0.0003514005],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0005809399,"threshold_uncertainty_score":0.001943409,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0222849951432156,"score_gpt":0.3039243433164068,"score_spread":0.2816393481731912,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}