{"id":"W2547009557","doi":"10.1111/jvh.12616","title":"Phylogenetic analysis of full‐length, early infection, hepatitis C virus genomes among people with intravenous drug use: the InC<sup>3</sup> Study","year":2016,"lang":"en","type":"article","venue":"Journal of Viral Hepatitis","topic":"Hepatitis C virus research","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"National Institute on Drug Abuse; National Institute of Allergy and Infectious Diseases; Rijksinstituut voor Volksgezondheid en Milieu; National Health and Medical Research Council; Medical Research Council; Fonds de Recherche du Québec - Santé; National Institutes of Health; Canadian Institutes of Health Research; University of New South Wales; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"Phylogenetic tree; Hepatitis C virus; Molecular epidemiology; Genome; Biology; Phylogenetics; Virology; Evolutionary biology; Genetics; Virus; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001184272,0.0003853051,0.001356443,0.001300529,0.000246927,0.0001130164,0.0004216834,0.0001421593,0.0006812369],"category_scores_gemma":[0.000518773,0.0002140506,0.0004443675,0.001941403,0.0004175724,0.0005922784,0.0001432817,0.000642063,0.00003573509],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004039929,"about_ca_system_score_gemma":0.0004467784,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.07788138,"about_ca_topic_score_gemma":0.1272551,"domain_scores_codex":[0.9950296,0.0007515551,0.001429534,0.0003886994,0.0017972,0.0006034262],"domain_scores_gemma":[0.9957287,0.0006276846,0.0009163601,0.0007692823,0.001554174,0.0004037586],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000456859,0.0007793132,0.9586975,0.00003953474,0.004140507,0.0003746197,0.00477259,0.0002883094,0.001465441,0.00001121709,0.0003149288,0.02865921],"study_design_scores_gemma":[0.002246139,0.006277304,0.9860571,0.0001939792,0.00257102,0.0001090641,0.0001565613,0.0007898491,0.000757468,0.00002929476,0.0005566211,0.0002555773],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972344,0.000374945,0.0007679722,0.000344919,0.0001110248,0.0008906849,0.0001382288,0.00002744333,0.0001104048],"genre_scores_gemma":[0.9917639,0.007012214,0.0003740199,0.00008178119,0.0003001241,0.00004263665,0.000008274194,0.0000713382,0.0003457202],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04937366,"threshold_uncertainty_score":0.9282591,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01305511895633857,"score_gpt":0.269022471669071,"score_spread":0.2559673527127325,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}