{"id":"W2547009557","doi":"10.1111/jvh.12616","title":"Phylogenetic analysis of full‐length, early infection, hepatitis C virus genomes among people with intravenous drug use: the InC<sup>3</sup> Study","year":2016,"lang":"en","type":"article","venue":"Journal of Viral Hepatitis","topic":"Hepatitis C virus research","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"National Institute on Drug Abuse; National Institute of Allergy and Infectious Diseases; Rijksinstituut voor Volksgezondheid en Milieu; National Health and Medical Research Council; Medical Research Council; Fonds de Recherche du Québec - Santé; National Institutes of Health; Canadian Institutes of Health Research; University of New South Wales; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"Phylogenetic tree; Hepatitis C virus; Molecular epidemiology; Genome; Biology; Phylogenetics; Virology; Evolutionary biology; Genetics; Virus; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006517833,0.0001854247,0.0002468807,0.0008005358,0.0006464497,0.0004507436,0.0002838747,0.0004162103,0.0009378917],"category_scores_gemma":[0.00180173,0.0002241296,0.0003623798,0.0008539899,0.0002712723,0.0002503003,0.0004994306,0.0005058086,0.0002148527],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002816364,"about_ca_system_score_gemma":0.0003157471,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00880568,"about_ca_topic_score_gemma":0.01066301,"domain_scores_codex":[0.9995708,0.0001486716,0.00003310512,0.0001062568,0.00006427878,0.0000769816],"domain_scores_gemma":[0.9989098,0.0002471684,0.0002655331,0.0001512196,0.0002072527,0.0002190327],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001990942,0.00003562824,0.9966437,0.000007729103,0.00003791988,0.00005651905,0.0003053763,0.00004175461,0.001331078,0.00001723674,0.00008786829,0.001236139],"study_design_scores_gemma":[0.000006586749,0.0001050307,0.9982961,0.000004228202,0.00002791662,0.0003557821,0.0004397922,0.00031739,0.0002367655,0.0000202657,0.000187328,0.000002869615],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996463,0.00002720272,0.00006445355,0.000009926905,7.765956e-7,0.000004043045,0.0001701214,8.428379e-7,0.00007625415],"genre_scores_gemma":[0.9991829,0.00003025625,0.0002210071,0.00001981888,0.000002587864,0.000008549263,0.0004562939,0.000002258795,0.00007635878],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00880568,"threshold_uncertainty_score":0.01750886,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01305511895633857,"score_gpt":0.269022471669071,"score_spread":0.2559673527127325,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}