{"id":"W2547483025","doi":"10.1007/978-1-4939-6581-6_6","title":"Quantitative Live-Cell Fluorescence Microscopy During Phagocytosis","year":2016,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Phagocytosis and Immune Regulation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":false,"ca_institutions":"St. Michael's Hospital; Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Phagosome; Phagocytosis; Cell biology; Confocal microscopy; Vacuole; Fluorescence microscope; Cytoplasm; Biology; Confocal; Effector; Intracellular; Macrophage; Phagolysosome; Green fluorescent protein; Chemistry; Fluorescence; Biochemistry; In vitro; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007813098,0.0002559456,0.0004458189,0.0002419395,0.0001047637,0.000009955893,0.000344077,0.0003894732,0.000381545],"category_scores_gemma":[0.0003621235,0.0001847117,0.0001408905,0.0002238848,0.0004108188,0.00007932171,0.0001741828,0.0002159281,0.0003389952],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009658756,"about_ca_system_score_gemma":0.00004410633,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005631044,"about_ca_topic_score_gemma":0.000003652053,"domain_scores_codex":[0.996353,0.002050999,0.0004601465,0.0005607234,0.00002312706,0.0005519998],"domain_scores_gemma":[0.9988701,0.0004445611,0.0001780399,0.0004182078,0.00006450241,0.00002454512],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001910322,0.00009770071,0.003844879,0.0000129526,0.00005201225,0.000006292344,0.000160732,0.000001316529,0.9823729,0.00202139,0.00002410324,0.01121474],"study_design_scores_gemma":[0.001813376,0.0002653919,0.004468394,0.0000576846,0.00001903653,0.00002229533,0.00006303399,0.000005243782,0.9900737,0.001398105,0.001553661,0.0002600644],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6382763,0.005751664,0.3545687,0.0002135135,0.0005372711,0.0002355974,0.00001728572,0.00005312881,0.0003465488],"genre_scores_gemma":[0.612001,0.0003326268,0.3865283,0.0001050675,0.00001372111,0.00006905855,0.00002435943,0.00003484301,0.0008909847],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03195962,"threshold_uncertainty_score":0.7532324,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02180640101735327,"score_gpt":0.3707302857802498,"score_spread":0.3489238847628965,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}