{"id":"W2548164268","doi":"10.1007/978-1-4939-6581-6_4","title":"Quantifying Phagocytosis by Immunofluorescence and Microscopy","year":2016,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Phagocytosis and Immune Regulation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":false,"ca_institutions":"Toronto Metropolitan University","funders":"Canadian Institutes of Health Research","keywords":"Phagocytosis; Internalization; Cell biology; Opsonin; Macrophage; Immune system; Innate immune system; Receptor; Biology; Immunofluorescence; Fluorescence microscope; Chemistry; Antibody; Microbiology; Immunology; Fluorescence; Biochemistry; In vitro","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009091693,0.0002070593,0.0003734526,0.0001475446,0.00008720493,0.00001060912,0.0002244921,0.0003555003,0.0001286691],"category_scores_gemma":[0.0002850543,0.0001457801,0.00006977226,0.0001548701,0.0004141429,0.00006759944,0.0001535049,0.0001643655,0.00003866434],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004853146,"about_ca_system_score_gemma":0.00002326333,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007749309,"about_ca_topic_score_gemma":0.000003236885,"domain_scores_codex":[0.9974473,0.001264705,0.0003752268,0.0004661552,0.00001664825,0.0004299463],"domain_scores_gemma":[0.9991885,0.0003179251,0.0001182414,0.0003232551,0.00003286431,0.00001924348],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005436946,0.00003555603,0.007342488,0.000005580672,0.00004474883,0.000001224168,0.00004229262,7.027995e-8,0.8774573,0.001354427,0.0001334561,0.1135285],"study_design_scores_gemma":[0.001188376,0.000123169,0.002682915,0.00004646001,0.00001456094,0.00002978789,0.00001859025,0.000002937603,0.9734818,0.0009539098,0.0212531,0.0002043908],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.367953,0.03422989,0.5962914,0.0005511826,0.0005607827,0.0002090593,0.00002388966,0.00004777755,0.0001330053],"genre_scores_gemma":[0.7881648,0.001689369,0.2091879,0.0003418076,0.0000112072,0.00006291476,0.000046644,0.00003628719,0.0004590993],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.4202117,"threshold_uncertainty_score":0.5944738,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02716318551228957,"score_gpt":0.3869737381636235,"score_spread":0.3598105526513339,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}