{"id":"W2548419683","doi":"10.1021/acs.jproteome.6b00926","title":"Identification of MHC-Bound Peptides from Dendritic Cells Infected with <i>Salmonella enterica</i> Strain SL1344: Implications for a Nontyphoidal <i>Salmonella</i> Vaccine","year":2016,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Salmonella; Salmonella enterica; Biology; Microbiology; Antigen; Major histocompatibility complex; Immune system; MHC class I; MHC class II; Virology; T cell; Immunology; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000110257,0.0003065974,0.0002052314,0.0001449118,0.0000959527,0.0002193734,0.00012998,0.0002085525,0.0004351342],"category_scores_gemma":[0.0001001181,0.00008906139,0.0002155261,0.0001161138,0.0001190419,0.0001440134,0.0001170355,0.0003302588,0.0001974424],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00013595,"about_ca_system_score_gemma":0.000155608,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002670616,"about_ca_topic_score_gemma":0.0003912206,"domain_scores_codex":[0.9999343,0.000008083342,0.000005848636,0.00001543735,0.00001472528,0.00002151426],"domain_scores_gemma":[0.9999391,0.000009220758,0.00001809369,0.000004275058,0.00001000144,0.00001928049],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005392271,0.00001072133,0.000410494,0.00001490548,0.000001367465,0.00001251439,0.00000298626,0.00001902381,0.9990396,0.00000484674,0.000006730797,0.000423],"study_design_scores_gemma":[0.0000221795,0.0006304603,0.02664617,0.00001208164,0.00002361707,0.0003619188,0.00006709679,0.0009703405,0.970242,0.00005162261,0.0009656434,0.000006787563],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977971,0.0002942199,0.001226146,0.00006351245,0.00001015508,0.00002345002,0.0003265322,0.00001095963,0.0002479201],"genre_scores_gemma":[0.9924259,0.000580785,0.005088457,0.0001266169,0.000009665573,0.00002489362,0.001223561,0.00001656344,0.0005035683],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0004351342,"threshold_uncertainty_score":0.001455724,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05378716604340327,"score_gpt":0.3221837550926275,"score_spread":0.2683965890492243,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}