{"id":"W2548419683","doi":"10.1021/acs.jproteome.6b00926","title":"Identification of MHC-Bound Peptides from Dendritic Cells Infected with <i>Salmonella enterica</i> Strain SL1344: Implications for a Nontyphoidal <i>Salmonella</i> Vaccine","year":2016,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Salmonella; Salmonella enterica; Biology; Microbiology; Antigen; Major histocompatibility complex; Immune system; MHC class I; MHC class II; Virology; T cell; Immunology; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002385545,0.0001976206,0.0005269906,0.0001070671,0.0002104195,0.00007446134,0.0006533705,0.0001672671,0.00010841],"category_scores_gemma":[0.0005715088,0.0000710904,0.0002105894,0.0006069724,0.0002152763,0.0002485677,0.00009033873,0.0002954645,0.00001913182],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001004753,"about_ca_system_score_gemma":0.00009155168,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001524458,"about_ca_topic_score_gemma":0.0001478744,"domain_scores_codex":[0.996999,0.0005259775,0.001059795,0.0003762195,0.0004742129,0.0005648424],"domain_scores_gemma":[0.9948201,0.002544093,0.0007552044,0.000186825,0.001454063,0.0002397243],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005163933,0.0002380043,0.02463416,0.00002471137,0.00007903282,0.000004678344,0.00005000151,0.000002837959,0.9656111,0.00006495892,0.0007202135,0.008053934],"study_design_scores_gemma":[0.001553844,0.00300756,0.4310841,0.0002695057,0.00006843824,0.0001044678,0.0002729598,0.00001788298,0.5504516,0.01038163,0.002496955,0.0002910211],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926707,0.0003342346,0.001169759,0.004389385,0.00008787917,0.0008541737,0.0004303739,0.00001682697,0.000046673],"genre_scores_gemma":[0.9981951,0.0003210988,0.0006323775,0.0000427732,0.0004669836,0.0001013524,0.00002449149,0.000005779877,0.0002100058],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4151595,"threshold_uncertainty_score":0.2898982,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05378716604340327,"score_gpt":0.3221837550926275,"score_spread":0.2683965890492243,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}