{"id":"W2548849758","doi":"10.1093/molbev/msw235","title":"Progressive and Biased Divergent Evolution Underpins the Origin and Diversification of Peridinin Dinoflagellate Plastids","year":2016,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Alberta Innovates; Alberta Innovates - Technology Futures; Natural Sciences and Engineering Research Council of Canada; Wellcome Trust","keywords":"Peridinin; Plastid; Dinoflagellate; Biology; Minicircle; Evolutionary biology; Apicoplast; Genome; Endosymbiosis; Lineage (genetic); Phylogenetics; Genetics; Gene; Algae; Botany; Chloroplast","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001398036,0.0001065214,0.00009553962,0.00003834646,0.0001849927,0.000006413699,0.00007321338,0.0001550891,0.000004809589],"category_scores_gemma":[0.00006158352,0.00007023583,0.00002958705,0.00005107246,0.0005066132,0.000006826399,0.0001568159,0.00004136991,0.000001532994],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001822841,"about_ca_system_score_gemma":0.00002789608,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003766538,"about_ca_topic_score_gemma":0.00000700015,"domain_scores_codex":[0.999308,0.0001235968,0.000103095,0.0002756343,0.00004802455,0.0001416386],"domain_scores_gemma":[0.9996554,0.00002031527,0.00008490866,0.0001365977,0.00005429503,0.0000484365],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001501143,0.00001957685,0.1993929,0.00001350898,0.00005724006,0.000001407653,0.00004350639,0.000002309817,0.7907336,0.008474531,0.00005822078,0.00105299],"study_design_scores_gemma":[0.001500555,0.0009175651,0.8213345,0.00004793867,0.0001122586,0.00004973722,0.0001664444,0.0001222212,0.1681772,0.006204844,0.0010785,0.0002881466],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9686713,0.003255469,0.02733603,0.0003767809,0.00006812846,0.0001906131,0.00005685947,0.000006501471,0.00003834727],"genre_scores_gemma":[0.9993501,0.0003748184,0.00012439,0.00003141416,0.00002944104,0.000008634691,0.00003595584,0.000004418371,0.00004086169],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6225564,"threshold_uncertainty_score":0.2864134,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01017774781614041,"score_gpt":0.2441006910718911,"score_spread":0.2339229432557506,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}