{"id":"W2548940347","doi":"10.1097/mib.0000000000000956","title":"Early Changes in Microbial Community Structure Are Associated with Sustained Remission After Nutritional Treatment of Pediatric Crohnʼs Disease","year":2016,"lang":"en","type":"article","venue":"Inflammatory Bowel Diseases","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":93,"is_retracted":false,"has_abstract":true,"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"Akkermansia muciniphila; Internal medicine; Microbiome; Parenteral nutrition; Crohn's disease; Gastroenterology; Medicine; Disease; Biology; Immunology; Gut flora; Bioinformatics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00008679876,0.0003927681,0.0002754055,0.0001834479,0.0001334588,0.0000269885,0.0002476565,0.0001874077,0.0001282319],"category_scores_gemma":[0.0002680061,0.000282891,0.0001616981,0.0001238028,0.0002051448,0.00002626387,0.0001038917,0.00008803057,0.000004213251],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001784024,"about_ca_system_score_gemma":0.0004199074,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001312531,"about_ca_topic_score_gemma":0.0006196988,"domain_scores_codex":[0.9980687,0.0004391196,0.0003620193,0.000405263,0.0002940774,0.0004308033],"domain_scores_gemma":[0.9983093,0.00006753621,0.0003011349,0.0006401789,0.000267153,0.0004146794],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.007213788,0.0008209591,0.9766884,0.000188856,0.00009615086,0.0008201828,0.00008671563,0.00001638051,0.01365038,0.00001135029,0.0003164025,0.00009043873],"study_design_scores_gemma":[0.004316343,0.0002634311,0.9924927,0.0002210963,0.0001629144,0.000001841065,0.00007397546,0.00000247517,0.00173542,0.0001286298,0.0002014136,0.0003998042],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948058,0.0005384814,0.000005618435,0.0001129459,0.00006622588,0.000591397,0.003825856,0.00004012775,0.00001360455],"genre_scores_gemma":[0.9985774,0.0001132296,0.00001306509,0.00006941296,0.0003323238,0.000170042,0.0004803387,0.00005535883,0.0001888551],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01580426,"threshold_uncertainty_score":0.9999623,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006474083263241526,"score_gpt":0.2143692489623479,"score_spread":0.2078951656991064,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}