{"id":"W2549871051","doi":"10.1038/ncomms13419","title":"Altered intestinal microbiota–host mitochondria crosstalk in new onset Crohn’s disease","year":2016,"lang":"en","type":"article","venue":"Nature Communications","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":453,"is_retracted":false,"has_abstract":true,"ca_institutions":"Children's Hospital of Eastern Ontario; University of Guelph; University of Ottawa","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Center for Gastrointestinal Biology and Disease, School of Medicine, University of North Carolina at Chapel Hill; National Cancer Institute; Canadian Institutes of Health Research; Mansoura University; Ministero dello Sviluppo Economico; Crohn's and Colitis Canada; Saudi Arabian Cultural Bureau; Ontario Ministry of Economic Development and Innovation; Government of Canada; Ontario Genomics Institute; Canadian Child Health Clinician Scientist Program; University of Ottawa; National Institutes of Health; Ontario Genomics; Crohn's and Colitis Foundation of America; Genome Canada; King Abdulaziz University; Canadian Association of Gastroenterology","keywords":"Dysbiosis; Biology; Crosstalk; Gut flora; Colitis; Crohn's disease; Phenotype; Immunology; Inflammatory bowel disease; Disease; Microbiome; Pathogenesis; Microbiology; Genetics; Medicine; Gene; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001052762,0.00016386,0.0001312054,0.00007833137,0.0001560246,0.00003415407,0.0009198033,0.0002655541,0.00004257553],"category_scores_gemma":[0.0003160257,0.0001317187,0.00008363377,0.0001549591,0.0001820049,0.000007732344,0.0004391893,0.0003979501,0.00005596408],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005829783,"about_ca_system_score_gemma":0.0005796771,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007911521,"about_ca_topic_score_gemma":0.003629775,"domain_scores_codex":[0.9989643,0.0001189954,0.0002572582,0.0003122054,0.00005875954,0.0002885019],"domain_scores_gemma":[0.9977517,0.0000595456,0.00008904839,0.001791817,0.00009828431,0.0002096039],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001238346,0.0001557042,0.03047955,0.000009889244,0.00001370176,0.000002978376,0.00004476522,2.246666e-7,0.901069,0.0005383154,0.06682111,0.0007409077],"study_design_scores_gemma":[0.001034881,0.00004759204,0.6731123,0.0001237429,0.00001357644,0.00002720891,0.00001814505,0.000003208447,0.009359134,0.0001494108,0.3158652,0.0002455833],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9624384,0.0122969,0.0003748875,0.0227585,0.0004091657,0.0005698075,0.0004091058,0.00004308136,0.0007001338],"genre_scores_gemma":[0.9891984,0.0009796943,0.005474492,0.001323385,0.0001290539,0.00001899118,0.0003741906,0.00002429697,0.002477516],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8917099,"threshold_uncertainty_score":0.5371335,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01558071431618335,"score_gpt":0.3102168591428255,"score_spread":0.2946361448266422,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}