{"id":"W2550462889","doi":"10.1038/sdata.2016.97","title":"A variant reference data set for the Africanized honeybee, Apis mellifera","year":2016,"lang":"en","type":"article","venue":"Scientific Data","topic":"Plant and animal studies","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"York University","funders":"Ontario Ministry of Research and Innovation; Natural Sciences and Engineering Research Council of Canada; Fundação de Amparo à Pesquisa do Estado de São Paulo; York University","keywords":"Biology; SNP; Beekeeping; Population; Single-nucleotide polymorphism; Honey bee; Evolutionary biology; Population genetics; Genetics; Zoology; Ecology; Gene; Genotype; Demography","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001423842,0.0001123381,0.0001349434,0.000007053522,0.0008764721,0.0003137559,0.003877245,0.0000335236,0.0003435238],"category_scores_gemma":[0.0004925195,0.0000246121,0.00002360264,0.0003176544,0.0002411791,0.0003656582,0.002186592,0.00004587377,0.0002093114],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007419837,"about_ca_system_score_gemma":0.00001731063,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001529243,"about_ca_topic_score_gemma":0.003751391,"domain_scores_codex":[0.9983823,0.00004140669,0.000161207,0.0008178119,0.000264551,0.0003326714],"domain_scores_gemma":[0.9983636,0.0008977394,0.00007407396,0.0005319052,0.00006714968,0.00006555589],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004502066,0.00003468795,0.0002321161,0.000003468738,0.00003148543,0.000002888572,0.00003021639,2.030886e-8,0.2315983,0.0009557918,0.7052686,0.06179738],"study_design_scores_gemma":[0.0001599751,0.0000424124,0.004406234,0.00002291375,0.00003132518,0.000006473979,0.0002032981,0.0002667124,0.0005922551,0.000927145,0.9931877,0.0001535104],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.1877341,0.004666059,0.001643647,0.06917829,0.003354274,0.002515052,0.7285519,0.0004768203,0.001879912],"genre_scores_gemma":[0.9791082,0.0003872533,0.0006634654,0.0002317595,0.0005929194,0.00003436352,0.009673367,0.000001728438,0.009306993],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.7913741,"threshold_uncertainty_score":0.720495,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.4006907821873715,"score_gpt":0.2947116643292612,"score_spread":0.1059791178581103,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}