{"id":"W2550557415","doi":"10.1016/j.virusres.2016.11.016","title":"Control of human papillomavirus gene expression by alternative splicing","year":2016,"lang":"en","type":"review","venue":"Virus Research","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":119,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"Medical Research Council; King Abdulaziz University; University of Glasgow; Wellcome Trust; Wellcome","keywords":"Biology; RNA splicing; Alternative splicing; Polyadenylation; Viral replication; Gene; Transcription (linguistics); Splicing factor; Viral life cycle; Gene expression; Cell biology; Genetics; SR protein; Messenger RNA; Virology; Genome; Virus; RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001809455,0.0003827698,0.001088899,0.0003591244,0.0002753938,0.00005191067,0.001076839,0.0005007864,0.0001160124],"category_scores_gemma":[0.0003784513,0.0002611374,0.0004138433,0.0002662159,0.000369103,0.00000683947,0.0006043217,0.0006532989,0.0001240546],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001019147,"about_ca_system_score_gemma":0.000337394,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000461347,"about_ca_topic_score_gemma":0.00002310839,"domain_scores_codex":[0.9953949,0.00118024,0.00065391,0.0008403013,0.0009999453,0.0009307287],"domain_scores_gemma":[0.9978383,0.0002182917,0.0002694207,0.0009906323,0.0003870029,0.0002963534],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00004653252,0.00005363939,0.000003756655,0.001005244,0.0001292635,0.00001172374,0.000004783516,1.145141e-7,0.7096818,0.00002311547,0.004575038,0.284465],"study_design_scores_gemma":[0.0005025954,0.0004212236,5.647951e-7,0.003084236,0.00001902067,0.000005530946,0.000004714557,0.000001337057,0.3530239,0.00002154116,0.642696,0.0002192648],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.004163478,0.9928015,0.0005402759,0.00001056228,0.00005579729,0.001011423,0.0005498311,0.000009667147,0.0008573963],"genre_scores_gemma":[0.002339174,0.9901946,0.00004378923,0.0000121226,0.0004953163,0.0002432493,0.0002336322,0.0001009648,0.006337111],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.638121,"threshold_uncertainty_score":0.9999841,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08764530227455626,"score_gpt":0.4448487783763189,"score_spread":0.3572034761017626,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}