{"id":"W2551069776","doi":"10.1038/ncomms13390","title":"The pangenome of an agronomically important crop plant Brassica oleracea","year":2016,"lang":"en","type":"article","venue":"Nature Communications","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":570,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada; Plant Biotechnology Institute; Saskatchewan Research Council (Canada); Agriculture and Agri-Food Canada","funders":"Division of Integrative Organismal Systems; National Cancer Institute; Australian Research Council; Biotechnology and Biological Sciences Research Council; National Science Foundation; University of Queensland; Queensland University of Technology; Monash University; University of Technology Sydney; Australian Government; Department for Environment, Food and Rural Affairs, UK Government; Griffith University; Queensland Cyber Infrastructure Foundation; National Computational Infrastructure; Government of Western Australia","keywords":"Brassica oleracea; Biology; Gene; Glucosinolate; Brassicaceae; Brassica; Genetics; Genome; Brassica rapa; Crop; Botany; Agronomy","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001023921,0.0003393345,0.0003078977,0.0008896866,0.0003972544,0.0003035913,0.0001788437,0.0002142174,0.001263825],"category_scores_gemma":[0.0002956728,0.000107581,0.0003501925,0.001158032,0.0001714651,0.0002090754,0.0004063259,0.0002515631,0.0003373839],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002563696,"about_ca_system_score_gemma":0.0002532044,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003558175,"about_ca_topic_score_gemma":0.005468733,"domain_scores_codex":[0.9999028,0.000007928455,0.000006795214,0.00004578691,0.00001939065,0.00001723466],"domain_scores_gemma":[0.9997805,0.00003942187,0.0000590828,0.00003811058,0.00003080467,0.00005212359],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002769175,0.00001475317,0.005785553,0.0001367451,0.00002756771,0.0001570782,0.0001366682,0.0001586733,0.9879969,0.00006977913,0.00006173969,0.005177713],"study_design_scores_gemma":[0.0000623923,0.0006542044,0.8257555,0.00006275842,0.0003488174,0.00321534,0.0006347446,0.001940785,0.1418407,0.0006798807,0.02476081,0.00004393633],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9733511,0.001100133,0.003977186,0.00008171547,0.0000111215,0.00004123924,0.01986126,0.0001899177,0.001386307],"genre_scores_gemma":[0.9401713,0.00118559,0.005170574,0.00009667313,0.00001682035,0.00007121,0.05134441,0.0001124566,0.001830889],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003558175,"threshold_uncertainty_score":0.007074952,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01705799905978399,"score_gpt":0.240737264642791,"score_spread":0.223679265583007,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}