{"id":"W2551069776","doi":"10.1038/ncomms13390","title":"The pangenome of an agronomically important crop plant Brassica oleracea","year":2016,"lang":"en","type":"article","venue":"Nature Communications","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":570,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada; Plant Biotechnology Institute; Saskatchewan Research Council (Canada); Agriculture and Agri-Food Canada","funders":"Division of Integrative Organismal Systems; National Cancer Institute; Australian Research Council; Biotechnology and Biological Sciences Research Council; National Science Foundation; University of Queensland; Queensland University of Technology; Monash University; University of Technology Sydney; Australian Government; Department for Environment, Food and Rural Affairs, UK Government; Griffith University; Queensland Cyber Infrastructure Foundation; National Computational Infrastructure; Government of Western Australia","keywords":"Brassica oleracea; Biology; Gene; Glucosinolate; Brassicaceae; Brassica; Genetics; Genome; Brassica rapa; Crop; Botany; Agronomy","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001813502,0.00007285352,0.00008756138,0.00000535057,0.0004543962,0.00002879725,0.001086014,0.0001137249,0.00008526137],"category_scores_gemma":[0.00008652204,0.00001885915,0.00006218373,0.0001383226,0.0001559749,0.00005878446,0.000197204,0.0001520654,0.00001139926],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001683737,"about_ca_system_score_gemma":0.00001842825,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004231876,"about_ca_topic_score_gemma":0.005636332,"domain_scores_codex":[0.9993024,0.0001003744,0.0002388424,0.0001233752,0.0000997054,0.0001352371],"domain_scores_gemma":[0.9986203,0.0006664392,0.0001319332,0.0004320663,0.00008393895,0.0000653239],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002055725,0.0002441737,0.007402384,8.47717e-7,0.0000357529,3.531825e-7,0.0001012984,4.703977e-7,0.8629419,0.03373985,0.001020904,0.09449147],"study_design_scores_gemma":[0.0001313125,0.0001285921,0.5230572,0.00001446115,0.00001760105,0.000006453261,0.00007222698,0.00009012179,0.003421107,0.003007352,0.4699186,0.0001349206],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9575083,0.002895915,0.000002401074,0.03790888,0.0000942376,0.0001763549,0.0003419394,0.00003969308,0.001032281],"genre_scores_gemma":[0.9979561,0.0009868358,0.0005645087,0.0001281146,0.00007833412,0.00002022981,0.00009874724,7.873495e-7,0.0001663561],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8595209,"threshold_uncertainty_score":0.3494895,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01705799905978399,"score_gpt":0.240737264642791,"score_spread":0.223679265583007,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}