{"id":"W2552105647","doi":"10.1371/journal.pone.0166274","title":"The Structure of Treponema pallidum Tp0624 Reveals a Modular Assembly of Divergently Functionalized and Previously Uncharacterized Domains","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Light Source","keywords":"Treponema; Peptidoglycan; Biology; Cell envelope; Biogenesis; Bacterial outer membrane; Treponema denticola; Cell biology; Genetics; Cell wall; Microbiology; Gene; Bacteria; Virology; Syphilis; Porphyromonas gingivalis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001464638,0.0001439921,0.0005051179,0.00004518642,0.0000604911,0.000006844258,0.00006576296,0.00007016922,0.0002704279],"category_scores_gemma":[0.000282747,0.00007001895,0.0001023234,0.0000854131,0.0001031101,0.00004719123,0.00004733527,0.00004536202,0.000003738861],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004151789,"about_ca_system_score_gemma":0.00004191732,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001308171,"about_ca_topic_score_gemma":0.00001212133,"domain_scores_codex":[0.9987125,0.00007366943,0.0003854701,0.0002200765,0.0004362903,0.0001719976],"domain_scores_gemma":[0.9987602,0.0002919182,0.000256977,0.000394398,0.0001974165,0.00009909936],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005030426,0.001187057,0.1593705,0.0001797282,0.001403892,0.000007470467,0.0001221029,4.722884e-8,0.8351379,0.0004546793,0.00007697879,0.001556587],"study_design_scores_gemma":[0.006054248,0.0007623244,0.7748325,0.001088168,0.001242164,0.00001112685,0.00002740318,0.000006336705,0.214452,0.001052042,0.0003579894,0.0001137427],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955658,0.00163261,0.00001117588,0.001841506,0.00004244218,0.000687619,0.0001332554,0.00001759357,0.00006802571],"genre_scores_gemma":[0.9963431,0.002260351,0.0004399965,0.00007495417,0.00007977222,0.00003536787,0.0000200547,0.00001717655,0.0007292233],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6206859,"threshold_uncertainty_score":0.2960996,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03388208597516521,"score_gpt":0.2447799465226039,"score_spread":0.2108978605474387,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}