{"id":"W2552723318","doi":"10.1007/978-1-4939-6442-0_15","title":"Rapid SNP Detection and Genotyping of Bacterial Pathogens by Pyrosequencing","year":2016,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":false,"ca_institutions":"Canadian Food Inspection Agency","funders":"","keywords":"Biology; Genotyping; Pyrosequencing; Bacillus anthracis; Genetics; SNP genotyping; Virulence; Typing; Genome; Single-nucleotide polymorphism; Whole genome sequencing; Computational biology; Shiga toxin; Multilocus sequence typing; Gene; Genotype; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002772877,0.001205418,0.00167355,0.001463201,0.0006407312,0.001598739,0.001019757,0.001580008,0.0009322313],"category_scores_gemma":[0.005392743,0.001214091,0.001199582,0.001318458,0.000754524,0.0008224596,0.001411645,0.002687686,0.001952384],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003833532,"about_ca_system_score_gemma":0.0009593497,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007849726,"about_ca_topic_score_gemma":0.002048684,"domain_scores_codex":[0.9930586,0.001519616,0.0003271227,0.001949423,0.002754689,0.0003905633],"domain_scores_gemma":[0.9973587,0.001229443,0.0002542127,0.0005278341,0.0004876324,0.0001421765],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000342773,0.0001306237,0.003094292,0.0001899815,0.00009166095,0.0000670251,0.0001095598,0.001589448,0.9636201,0.001035319,0.0005173644,0.02921184],"study_design_scores_gemma":[0.00007352253,0.0008395196,0.02626834,0.00006749691,0.0001941031,0.0006306502,0.0000945385,0.0372243,0.9194396,0.00395865,0.01109579,0.0001135706],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.3155045,0.002342933,0.666819,0.0002741968,0.0002592527,0.0006203713,0.007715761,0.00254077,0.003923208],"genre_scores_gemma":[0.3817506,0.001216493,0.6017834,0.0005217689,0.00009035517,0.0008851806,0.008411658,0.0003825093,0.004958055],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.002772877,"threshold_uncertainty_score":0.01466459,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02402633413796595,"score_gpt":0.3635963298878463,"score_spread":0.3395699957498803,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}