{"id":"W2553097248","doi":"10.1038/srep37479","title":"Genome mining unveils widespread natural product biosynthetic capacity in human oral microbe Streptococcus mutans","year":2016,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":72,"is_retracted":false,"has_abstract":true,"ca_institutions":"Wilfrid Laurier University","funders":"Chinese Academy of Sciences; National Natural Science Foundation of China","keywords":"Streptococcus mutans; Genome; Natural product; Biology; Computational biology; Microbiology; Genetics; Gene; Bacteria; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001865281,0.0003295693,0.0005301805,0.0004581049,0.0002896571,0.0001525637,0.0001983436,0.0001193173,0.0004973111],"category_scores_gemma":[0.001221877,0.0001990033,0.0001628119,0.0009521007,0.0007035322,0.0002680436,0.0001267389,0.0002416945,0.00004477678],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002543175,"about_ca_system_score_gemma":0.0002151034,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001209063,"about_ca_topic_score_gemma":0.0002743,"domain_scores_codex":[0.9962402,0.00009618203,0.0008683937,0.001591334,0.0004752867,0.0007286155],"domain_scores_gemma":[0.9976765,0.00005196202,0.000358027,0.001358433,0.0003537266,0.0002013848],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002704396,0.0001536899,0.009790513,0.00006644674,0.0000281456,0.0005840263,0.0002522283,4.151611e-7,0.9804097,0.000008807617,0.002338185,0.00634078],"study_design_scores_gemma":[0.0003799012,0.00006209061,0.01669578,0.0004539072,0.00005206164,0.0007976413,0.00005094257,0.000001663831,0.9542179,0.0002786011,0.02666669,0.0003428122],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9920698,0.0003529328,0.00000306426,0.002105774,0.003899896,0.001039594,0.00001358874,0.0001155869,0.0003997069],"genre_scores_gemma":[0.9897005,0.000004699708,0.0005816075,0.00006507165,0.0002200279,0.00000547949,0.0000358434,0.00003290247,0.009353897],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02619181,"threshold_uncertainty_score":0.8115121,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0283072016891566,"score_gpt":0.2554082495988413,"score_spread":0.2271010479096847,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}