{"id":"W2553304672","doi":"10.1038/srep36891","title":"A genomic island in Vibrio cholerae with VPI-1 site-specific recombination characteristics contains CRISPR-Cas and type VI secretion modules","year":2016,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Wellcome Trust","keywords":"Vibrio cholerae; Cholera toxin; Integrase; CRISPR; Mobile genetic elements; Biology; Pathogenicity island; Genomic island; Cholera; Gene; Horizontal gene transfer; Genome; Genetics; Microbiology; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006120232,0.000146942,0.0001716311,0.0001199139,0.0001483525,0.0001674843,0.00007009447,0.00007179579,0.00003405483],"category_scores_gemma":[0.0001552913,0.0001038414,0.00002622952,0.0001418556,0.0002605431,0.00001740562,0.0001262469,0.0000598349,0.00001100408],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000665986,"about_ca_system_score_gemma":0.0000821098,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002198538,"about_ca_topic_score_gemma":0.0004362135,"domain_scores_codex":[0.9984683,0.00005967657,0.0002942326,0.0006871789,0.0002061333,0.0002844924],"domain_scores_gemma":[0.9990452,0.00001293785,0.0001673012,0.0004563286,0.0002371558,0.00008105662],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001186938,0.00003466598,0.07251249,0.00001376257,0.0000143977,0.00007227168,0.0001571705,0.000001027973,0.9232274,0.000008866605,0.001266807,0.002572429],"study_design_scores_gemma":[0.00126749,0.0005092575,0.6776617,0.0001426286,0.00001456677,0.000297057,0.0001078173,0.00004259129,0.2075207,0.0004678988,0.111507,0.0004612978],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976591,0.0002731175,0.0005886453,0.0001878551,0.0007501882,0.0003048405,0.00001727334,0.00001191536,0.0002069972],"genre_scores_gemma":[0.9974169,0.0003735986,0.0001683898,0.00001439124,0.00008427272,0.00002227822,0.0002094693,0.00001822083,0.00169248],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7157068,"threshold_uncertainty_score":0.4234531,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01156207746821045,"score_gpt":0.2454882156166489,"score_spread":0.2339261381484384,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}