{"id":"W2553304672","doi":"10.1038/srep36891","title":"A genomic island in Vibrio cholerae with VPI-1 site-specific recombination characteristics contains CRISPR-Cas and type VI secretion modules","year":2016,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Wellcome Trust","keywords":"Vibrio cholerae; Cholera toxin; Integrase; CRISPR; Mobile genetic elements; Biology; Pathogenicity island; Genomic island; Cholera; Gene; Horizontal gene transfer; Genome; Genetics; Microbiology; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006025731,0.0003198427,0.0002596819,0.0005114012,0.0002994741,0.0002992463,0.0003034226,0.0003902166,0.001133738],"category_scores_gemma":[0.0002829196,0.0001661658,0.0003284261,0.0005849986,0.0003048887,0.000139182,0.0003892816,0.0005761772,0.0005119679],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003373755,"about_ca_system_score_gemma":0.0003923704,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002469635,"about_ca_topic_score_gemma":0.003085698,"domain_scores_codex":[0.9998647,0.00001098911,0.00001110318,0.00004140236,0.00004468384,0.00002715808],"domain_scores_gemma":[0.9998442,0.00002275009,0.00006258582,0.00001702795,0.00001945835,0.00003405664],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007951476,0.00002384661,0.002284055,0.0001741886,0.00001333611,0.000323286,0.00008446306,0.0001537359,0.9920522,0.0002538892,0.0001383726,0.004419128],"study_design_scores_gemma":[0.00005479886,0.001047708,0.1844651,0.0001070814,0.0001646548,0.01410095,0.0008075474,0.002066272,0.7581466,0.0008518504,0.03811799,0.000069391],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9833537,0.002172851,0.00924821,0.0002131432,0.00005809991,0.00006444741,0.002506913,0.0003137224,0.002068872],"genre_scores_gemma":[0.9792082,0.0009397999,0.01033533,0.00009313704,0.0000175002,0.00004566796,0.00656864,0.00005273431,0.002739002],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002469635,"threshold_uncertainty_score":0.004910588,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01156207746821045,"score_gpt":0.2454882156166489,"score_spread":0.2339261381484384,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}