{"id":"W2553498078","doi":"10.3168/jds.2016-11770","title":"Genome-wide association study for lactation persistency, female fertility, longevity, and lifetime profit index traits in Holstein dairy cattle","year":2016,"lang":"en","type":"article","venue":"Journal of Dairy Science","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":84,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Longevity; Fertility; Dairy cattle; Trait; Herd; Lactation; Population; Genetics; Animal science; Demography; Pregnancy","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001352167,0.00009779006,0.0001522097,0.0001026968,0.00009603827,0.00003715823,0.0002786257,0.00007423976,0.00000520989],"category_scores_gemma":[0.0008079432,0.00007169593,0.0000503292,0.0001476512,0.0001315956,0.00003691137,0.00007659311,0.00007348778,0.000001126249],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007606744,"about_ca_system_score_gemma":0.0002693496,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003278532,"about_ca_topic_score_gemma":0.0000389891,"domain_scores_codex":[0.9988168,0.00006771131,0.0003241159,0.0002523202,0.0003188278,0.0002201627],"domain_scores_gemma":[0.999173,0.00008806821,0.0002798129,0.000119807,0.0002382111,0.0001011297],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001348111,0.0001353819,0.924392,0.00001308773,0.00001832361,4.522835e-7,0.0008348829,0.00007022626,0.07188605,0.000009341901,0.00005457081,0.002450849],"study_design_scores_gemma":[0.001176556,0.00113207,0.9924861,0.0000220276,0.00001750763,0.000004604997,0.0005701423,0.000005758536,0.004087948,0.0003070454,0.00009191844,0.00009834761],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958643,0.0002298696,0.00278477,0.000543185,0.0001424852,0.0003289031,0.00001008561,0.000002139521,0.00009422948],"genre_scores_gemma":[0.9972997,0.000009561845,0.002115628,0.0000633031,0.0000961708,0.000007875084,0.000001103028,0.000006699247,0.0003999481],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06809404,"threshold_uncertainty_score":0.2923675,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01715222696224257,"score_gpt":0.2677434484610743,"score_spread":0.2505912214988318,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}