{"id":"W2553572678","doi":"10.1016/j.ymeth.2016.11.011","title":"Identification of unknown RNA partners using MAPS","year":2016,"lang":"en","type":"article","venue":"Methods","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research","keywords":"Transfer RNA; RNA; Computational biology; Biology; Identification (biology); Escherichia coli; Small RNA; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004412028,0.00006245717,0.00008896792,0.00001931552,0.00002973601,0.000003533717,0.0000850104,0.00004860555,0.000005341921],"category_scores_gemma":[0.0001057921,0.00004457167,0.00005150674,0.00003834568,0.00006340213,3.227256e-7,0.00006068332,0.00001181204,0.000001563654],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005549452,"about_ca_system_score_gemma":0.00002057627,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004527508,"about_ca_topic_score_gemma":0.000001307942,"domain_scores_codex":[0.9994321,0.000106289,0.000169744,0.0001543387,0.00003981063,0.00009772949],"domain_scores_gemma":[0.9995903,0.00002165074,0.00008814854,0.0002182629,0.00005854161,0.00002310467],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000008880113,0.000008107853,0.0007684588,0.00000494518,0.00003010524,7.419209e-8,0.00002208911,0.00001332939,0.9647348,0.0001944737,0.00009880571,0.03411595],"study_design_scores_gemma":[0.0001424167,0.00003195482,0.002106289,0.00000436633,0.00001549854,0.000001316501,0.00001827329,0.00002228007,0.9706061,0.0008471191,0.02613638,0.00006793809],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8475704,0.0008401659,0.150693,0.00006865762,0.0001887805,0.00005686117,0.000009548628,0.000001453098,0.0005711782],"genre_scores_gemma":[0.93577,0.0001856646,0.06329796,0.00002372006,0.00008411972,0.000004637256,0.000001997409,0.000009063763,0.0006227738],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08819968,"threshold_uncertainty_score":0.181758,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05158376557699614,"score_gpt":0.3956313867092907,"score_spread":0.3440476211322946,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}