{"id":"W2555868654","doi":"10.1038/srep36419","title":"Listeria monocytogenes sequence type 1 is predominant in ruminant rhombencephalitis","year":2016,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":105,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Institute of Veterinary Bacteriology, University of Bern; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; University of Bern","keywords":"Multilocus sequence typing; Biology; Virulence; Listeria monocytogenes; Microbiology; Pathogen; Tissue tropism; Tropism; Phylogenetics; Genotype; Typing; Listeria; Sequence analysis; Gene; Virology; Genetics; Bacteria; Virus","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008475027,0.0002170041,0.000214868,0.00009334999,0.0001238475,0.00009891279,0.0003102919,0.000159527,0.0002276505],"category_scores_gemma":[0.0002154809,0.000156717,0.00009216084,0.0002810556,0.0004207866,0.00001930306,0.0004148093,0.00003847839,0.00005292977],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007304059,"about_ca_system_score_gemma":0.0002886757,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004883723,"about_ca_topic_score_gemma":0.0001025032,"domain_scores_codex":[0.9974267,0.0000732377,0.0005902065,0.00116471,0.0002810782,0.0004641019],"domain_scores_gemma":[0.9979709,0.0000105456,0.0002462696,0.001474073,0.000174845,0.0001233697],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007490059,0.00003588287,0.025747,0.00001381221,0.00001221604,0.0002337429,0.00009888749,0.000002793205,0.964531,0.00002468048,0.003780802,0.005444246],"study_design_scores_gemma":[0.0002300504,0.0001126508,0.003028561,0.00006909027,0.000007605279,0.000464729,0.00003561387,0.00000534293,0.8468522,0.000878857,0.1480494,0.0002658913],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922714,0.000543586,0.0001988626,0.0002068265,0.005813799,0.0002876454,0.00002611173,0.00001896964,0.0006327654],"genre_scores_gemma":[0.9912509,0.0001160568,0.00066665,0.00006219874,0.0001327523,0.00003764491,0.00005519727,0.00002711812,0.007651458],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1442686,"threshold_uncertainty_score":0.6390734,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07984266010068744,"score_gpt":0.335454778500472,"score_spread":0.2556121183997846,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}