{"id":"W2556063213","doi":"10.1101/gr.209643.116","title":"Multiparameter functional diversity of human C2H2 zinc finger proteins","year":2016,"lang":"en","type":"article","venue":"Genome Research","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":222,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Vetenskapsrådet","keywords":"Biology; Zinc finger; DNA-binding protein; Genetics; Computational biology; DNA; DNA binding site; Transcription factor; Krüppel; Protein–DNA interaction; Gene; Promoter; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005378527,0.00008176637,0.00009773412,0.0000781647,0.000245515,0.00001095724,0.0002676475,0.000107936,0.0001874204],"category_scores_gemma":[0.00007174233,0.00006211741,0.00007483455,0.00007847037,0.0002051229,0.000002711523,0.000868495,0.00008717646,0.00005013443],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003956362,"about_ca_system_score_gemma":0.0000673157,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004877084,"about_ca_topic_score_gemma":0.00003660703,"domain_scores_codex":[0.9989111,0.00008243024,0.0001422928,0.000274851,0.0002868985,0.0003024641],"domain_scores_gemma":[0.9992533,0.00002322725,0.00004282218,0.0003639817,0.0002392396,0.00007738117],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004114237,0.00006597948,0.005732348,0.00001940156,0.00003828932,0.000001376929,0.00004078091,0.000009124378,0.9926087,0.0002287108,0.0003352174,0.0008789715],"study_design_scores_gemma":[0.003109254,0.002079585,0.314732,0.00005544139,0.00002189846,0.00001549872,0.0001909707,0.00009835402,0.6492897,0.002969031,0.02679092,0.0006473809],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968911,0.0001100538,0.001346291,0.0001273942,0.00003376959,0.0002142786,0.00004980983,0.000004365329,0.001222901],"genre_scores_gemma":[0.9940872,0.0000520377,0.0006261294,0.00001332679,0.0001236352,0.0000183178,0.00003978711,0.00001337889,0.005026232],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.343319,"threshold_uncertainty_score":0.2533074,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06240072727671586,"score_gpt":0.3104141516803661,"score_spread":0.2480134244036502,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}