{"id":"W2556063213","doi":"10.1101/gr.209643.116","title":"Multiparameter functional diversity of human C2H2 zinc finger proteins","year":2016,"lang":"en","type":"article","venue":"Genome Research","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":222,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Vetenskapsrådet","keywords":"Biology; Zinc finger; DNA-binding protein; Genetics; Computational biology; DNA; DNA binding site; Transcription factor; Krüppel; Protein–DNA interaction; Gene; Promoter; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001982237,0.0002182344,0.0002094589,0.0007258993,0.0001955145,0.0002199152,0.0001374352,0.000238958,0.0006399988],"category_scores_gemma":[0.0002855806,0.0001207135,0.0001603457,0.0003865875,0.0002640694,0.0001724742,0.000239921,0.0001749951,0.0001840602],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001860222,"about_ca_system_score_gemma":0.0001015263,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005484834,"about_ca_topic_score_gemma":0.0006499008,"domain_scores_codex":[0.9998226,0.00002390296,0.00001374762,0.00006801447,0.00004771466,0.0000241495],"domain_scores_gemma":[0.9998342,0.00005853175,0.00002917182,0.00002143241,0.00002051363,0.00003618473],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002523628,0.00001504702,0.02114841,0.0000488841,0.00003905495,0.0001286605,0.00008757866,0.0006176169,0.9712722,0.0002201313,0.00006076356,0.006109234],"study_design_scores_gemma":[0.00003095954,0.0002847944,0.6087818,0.00001257762,0.00007930618,0.004978457,0.0001603432,0.005416537,0.3747307,0.001187262,0.004284523,0.00005284866],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979377,0.0004107479,0.001042681,0.00001795214,7.628333e-7,0.00000348164,0.0002686375,0.00001297191,0.0003049987],"genre_scores_gemma":[0.997715,0.0001500786,0.001158364,0.00002191383,0.000002786446,0.000006597307,0.0006794166,0.000008618505,0.0002572339],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007258993,"threshold_uncertainty_score":0.002141058,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06240072727671586,"score_gpt":0.3104141516803661,"score_spread":0.2480134244036502,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}