{"id":"W2556376335","doi":"10.1186/s12864-016-3251-8","title":"From yeast to hypha: defining transcriptomic signatures of the morphological switch in the dimorphic fungal pathogen Ophiostoma novo-ulmi","year":2016,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministère des Ressources naturelles et des Forêts; Université Laval; Center for Northern Studies","funders":"Natural Sciences and Engineering Research Council of Canada; Université de Montréal; Université de Sherbrooke; Université Laval","keywords":"Biology; Ophiostoma; Transcriptome; Saccharomyces cerevisiae; Gene; Dutch elm disease; Genetics; Model organism; DNA microarray; Yeast; Candida albicans; Hypha; Phenotype; Genome; Cell biology; Fungal protein; Gene expression; Fungus; Microbiology; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007175057,0.0001976183,0.0001999301,0.0003707144,0.0001458242,0.0003565596,0.0001007737,0.0002631563,0.0006607638],"category_scores_gemma":[0.0001214401,0.0001089291,0.0002317017,0.0003799981,0.0002162818,0.0001775299,0.0002562059,0.000385606,0.0002943144],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001496545,"about_ca_system_score_gemma":0.0001372253,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004022969,"about_ca_topic_score_gemma":0.0006669985,"domain_scores_codex":[0.9999186,0.000004495521,0.000004234121,0.00003281407,0.00001907824,0.00002072607],"domain_scores_gemma":[0.9998488,0.00003147111,0.00004927117,0.000008510416,0.00002714491,0.00003477746],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008027991,0.000008972425,0.001659644,0.0000348437,0.000004479059,0.00003559808,0.00003145117,0.00001946147,0.9973434,0.00001422927,0.00001873959,0.0007490218],"study_design_scores_gemma":[0.00001759936,0.0004677789,0.6211481,0.00002572087,0.00006179551,0.0007452745,0.00049763,0.001436022,0.3723259,0.0001973528,0.003055411,0.00002141373],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921669,0.001268429,0.002611034,0.00004551863,0.00001230581,0.00004674513,0.003158993,0.00004580551,0.0006442203],"genre_scores_gemma":[0.9878588,0.001071944,0.004544199,0.0001022314,0.000022521,0.00014208,0.005068406,0.00003701284,0.001152783],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006607638,"threshold_uncertainty_score":0.002210498,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02033860793873764,"score_gpt":0.2485227686740606,"score_spread":0.228184160735323,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}