{"id":"W2556376335","doi":"10.1186/s12864-016-3251-8","title":"From yeast to hypha: defining transcriptomic signatures of the morphological switch in the dimorphic fungal pathogen Ophiostoma novo-ulmi","year":2016,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministère des Ressources naturelles et des Forêts; Université Laval; Center for Northern Studies","funders":"Natural Sciences and Engineering Research Council of Canada; Université de Montréal; Université de Sherbrooke; Université Laval","keywords":"Biology; Ophiostoma; Transcriptome; Saccharomyces cerevisiae; Gene; Dutch elm disease; Genetics; Model organism; DNA microarray; Yeast; Candida albicans; Hypha; Phenotype; Genome; Cell biology; Fungal protein; Gene expression; Fungus; Microbiology; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003252478,0.0001720147,0.0001687546,0.00004103356,0.00006887865,0.00002079818,0.0008612378,0.0001954328,0.00002850991],"category_scores_gemma":[0.0001180551,0.00008714191,0.0001469647,0.0001472081,0.0001178755,0.000002409663,0.0002536139,0.0001625164,0.0000350404],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002498708,"about_ca_system_score_gemma":0.0001458537,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005171037,"about_ca_topic_score_gemma":0.0003745364,"domain_scores_codex":[0.9985844,0.0001977816,0.0002614142,0.0003865128,0.000231694,0.0003381769],"domain_scores_gemma":[0.9991756,0.00006933281,0.00005846387,0.0005694415,0.00005335144,0.00007380661],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002338352,0.0000584767,0.01384666,0.000006128645,0.00001574236,0.000008025011,0.0002480639,0.000186005,0.9840075,0.00005192909,0.0003548701,0.0009827553],"study_design_scores_gemma":[0.001150615,0.0003214526,0.176706,0.00003729331,0.00002298076,0.00004119596,0.0003147474,0.00004610044,0.8158507,0.0004845501,0.00473753,0.0002868396],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969563,0.0009527603,0.0004069348,0.0006179131,0.0001667516,0.0003217161,0.0004006393,0.000004382905,0.0001725303],"genre_scores_gemma":[0.9983838,0.0000714211,0.0007530389,0.000386036,0.0002180658,0.00003531255,0.00002359147,0.00002291959,0.000105785],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1681568,"threshold_uncertainty_score":0.3553544,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02033860793873764,"score_gpt":0.2485227686740606,"score_spread":0.228184160735323,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}