{"id":"W2556482818","doi":"10.1094/phyto-04-16-0176-r","title":"Oomycete Species Associated with Soybean Seedlings in North America—Part II: Diversity and Ecology in Relation to Environmental and Edaphic Factors","year":2016,"lang":"en","type":"article","venue":"Phytopathology","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":98,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Food and Agriculture; Agricultural Adaptation Council; United Soybean Board; Grain Farmers of Ontario; U.S. Department of Agriculture","keywords":"Biology; Oomycete; Edaphic; Operational taxonomic unit; Ecology; Internal transcribed spacer; Ribosomal DNA; Abundance (ecology); Clade; Botany; Pythium; Relative species abundance; Ordination; Diversity index; Microbial ecology; Ribosomal RNA; Phylogenetics; Species richness; 16S ribosomal RNA","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002302324,0.0001936673,0.0002070108,0.001004284,0.0004663208,0.000441519,0.000150547,0.0001913986,0.0004753001],"category_scores_gemma":[0.0002727591,0.0001778004,0.0001646285,0.0009329617,0.0003042175,0.0002774257,0.0004116091,0.0002133582,0.00006703412],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005038482,"about_ca_system_score_gemma":0.0003299501,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03228303,"about_ca_topic_score_gemma":0.1042897,"domain_scores_codex":[0.9998364,0.0000238847,0.0000177722,0.00005859466,0.00003026914,0.00003299148],"domain_scores_gemma":[0.9994735,0.00007161644,0.0002164889,0.00001990048,0.0001108435,0.0001077243],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001063623,0.00003990552,0.9731317,0.00004602459,0.00003352971,0.00011317,0.0005145058,0.00006601066,0.02207655,0.00001356604,0.00004674696,0.003811919],"study_design_scores_gemma":[6.987694e-7,0.00001576673,0.9994999,0.000001663755,0.000002597189,0.00002661856,0.0002604738,0.0000308479,0.0001103345,0.000002906837,0.0000473203,8.584173e-7],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995566,0.0001177616,0.00003211814,0.000008491425,8.610332e-7,0.000005266109,0.0001475697,0.000001135227,0.0001302528],"genre_scores_gemma":[0.9990466,0.0002083353,0.0001596357,0.00001689341,0.000002402906,0.00000854892,0.0004300178,9.703158e-7,0.0001266314],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03228303,"threshold_uncertainty_score":0.06419027,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01266686778115003,"score_gpt":0.1610373052518083,"score_spread":0.1483704374706583,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}