{"id":"W2557372274","doi":"10.1128/genomea.01341-16","title":"Whole-Genome Sequencing Applied to the Molecular Epidemiology of Shiga Toxin-Producing Escherichia coli O157:H7 in Argentina","year":2016,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; University of Toronto; Toronto Public Health","funders":"","keywords":"Escherichia coli; Biology; Shiga toxin; Genome; Outbreak; Microbiology; Whole genome sequencing; Toxin; Molecular epidemiology; Virology; Genetics; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009345222,0.0006841003,0.0006214769,0.001139064,0.0005269761,0.0006871059,0.0002755514,0.0003637338,0.001149205],"category_scores_gemma":[0.001295838,0.000333904,0.0004000129,0.001816782,0.0002235016,0.0002300255,0.0004239807,0.0004411791,0.0005474488],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007900598,"about_ca_system_score_gemma":0.00168983,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03169732,"about_ca_topic_score_gemma":0.04584317,"domain_scores_codex":[0.9991954,0.0002047,0.00006567421,0.0002107636,0.0002132324,0.0001102492],"domain_scores_gemma":[0.9993191,0.00007158236,0.0001312125,0.0000506334,0.0003562826,0.00007130723],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001416625,0.0002362428,0.1304513,0.001065567,0.0002744124,0.000762051,0.001318135,0.002519603,0.7785901,0.0005380993,0.004406492,0.07842136],"study_design_scores_gemma":[0.0001012575,0.0005520504,0.8974599,0.0003356717,0.0003853247,0.0009794855,0.001089123,0.005565507,0.04563118,0.0003585897,0.04749961,0.00004226245],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9200195,0.00520717,0.02121106,0.0005497688,0.0002085233,0.0004883587,0.04524388,0.000263008,0.006808725],"genre_scores_gemma":[0.8496745,0.006356376,0.04982693,0.000218093,0.00007707101,0.0004199253,0.08908948,0.000202518,0.004135145],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03169732,"threshold_uncertainty_score":0.06302565,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03694819901344321,"score_gpt":0.2962458822036249,"score_spread":0.2592976831901816,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}