{"id":"W2557817225","doi":"10.1107/s2053273314094157","title":"Structural and functional studies of Salmonella effector proteins","year":2014,"lang":"en","type":"article","venue":"Acta Crystallographica Section A Foundations and Advances","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; University of Saskatchewan","funders":"","keywords":"Effector; Salmonella enterica; Secretion; Biology; Salmonella; Intracellular parasite; Cell biology; Vacuole; Internalization; Endocytic cycle; Microbiology; Type three secretion system; Actin cytoskeleton; Intracellular; Bacteria; Virulence; Cytoskeleton; Cell; Cytoplasm; Biochemistry; Gene; Genetics; Endocytosis","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002175328,0.0001239423,0.0002191603,0.00003705415,0.0003332448,0.00002741937,0.00004409361,0.00006436821,0.00004553651],"category_scores_gemma":[0.0001517448,0.00005335332,0.0000535607,0.0002649346,0.0003339474,0.0002175322,0.00004000207,0.00007938373,1.350864e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005378437,"about_ca_system_score_gemma":0.000002698329,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004771555,"about_ca_topic_score_gemma":0.0003903765,"domain_scores_codex":[0.9991637,0.0001264458,0.0002162086,0.0002644621,0.00008849415,0.0001406315],"domain_scores_gemma":[0.9991172,0.000548213,0.0001417433,0.0000422095,0.00009250717,0.00005810545],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007291801,0.00003655448,0.123028,0.0000582763,0.00008336909,2.404143e-7,0.00009019425,0.00001013847,0.8227922,0.002057398,0.00008414091,0.05168655],"study_design_scores_gemma":[0.0002616756,0.0006341144,0.8889794,0.00002891434,0.00003532591,0.00003652793,0.0005600248,0.0001602376,0.0001460434,0.01184222,0.09711286,0.0002027118],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975716,0.001069998,0.00006618292,0.0007156233,0.0002092099,0.0001665544,0.00001234729,0.00004165965,0.0001468298],"genre_scores_gemma":[0.9983462,0.001085138,0.0001945539,0.00007924663,0.0001944284,0.0000294685,0.00004034403,9.914647e-7,0.00002960862],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8226462,"threshold_uncertainty_score":0.2563083,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02651076123388989,"score_gpt":0.2630889901597001,"score_spread":0.2365782289258102,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}