{"id":"W2558064711","doi":"10.1107/s2053273314087142","title":"Structural, Functional and Dynamic Studies of F Plasmid T4SS Proteins","year":2014,"lang":"en","type":"article","venue":"Acta Crystallographica Section A Foundations and Advances","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"York University","funders":"","keywords":"Periplasmic space; Plasmid; Pilus; Bacterial conjugation; Escherichia coli; Biology; Mutant; Population; Bacteria; Genetics; Chemistry; Gene; Cell biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009377264,0.0001123303,0.0001320823,0.00008022055,0.0002224884,0.00002879737,0.00004298093,0.00006280467,0.0000110777],"category_scores_gemma":[0.0001045566,0.00009731963,0.00003573339,0.0001205395,0.0004373458,0.00002814618,0.00004534571,0.00005148249,3.724252e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004847881,"about_ca_system_score_gemma":0.00001461403,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003547153,"about_ca_topic_score_gemma":0.0001718216,"domain_scores_codex":[0.999341,0.0000395097,0.0001798795,0.0002577056,0.00007922218,0.0001027134],"domain_scores_gemma":[0.9995586,0.00003379957,0.0001301025,0.0001303251,0.0001121096,0.00003512306],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000825315,0.00002204857,0.02254329,0.0001011671,0.0001104626,1.141265e-7,0.00003839678,0.00002895202,0.9735069,0.0008683632,0.00005204184,0.00264579],"study_design_scores_gemma":[0.002175922,0.001857301,0.5970257,0.00018395,0.0001582225,0.0001374991,0.002299874,0.001177706,0.004784279,0.01774145,0.3715306,0.0009275409],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952989,0.000890652,0.003065868,0.0002137038,0.0001919503,0.0001438354,0.00001146219,0.00001265498,0.0001709281],"genre_scores_gemma":[0.9948461,0.002887633,0.002005047,0.00002904412,0.00006970044,0.00001301451,0.00005619569,0.000008723797,0.00008452433],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9687226,"threshold_uncertainty_score":0.3968579,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01114674078679821,"score_gpt":0.2687711227654459,"score_spread":0.2576243819786477,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}