{"id":"W2558098955","doi":"10.1182/blood.v118.21.585.585","title":"High-Resolution Chromatin Immunoprecipitation (ChIP) Sequencing Identifies Novel Binding Targets and Prognostic Role for SOX11 in Mantle Cell Lymphoma","year":2011,"lang":"en","type":"article","venue":"Blood","topic":"Lymphoma Diagnosis and Treatment","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Cancer Agency","funders":"","keywords":"Chromatin immunoprecipitation; Biology; Transcription factor; Chromatin; Mantle cell lymphoma; Molecular biology; Gene; Immunoprecipitation; Chromosome conformation capture; Promoter; DNA methylation; Genetics; Cancer research; Computational biology; Gene expression; Lymphoma; Enhancer","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002741884,0.0001570761,0.0001675653,0.0004760637,0.0001084138,0.0003137405,0.0001202627,0.0001930369,0.001298991],"category_scores_gemma":[0.0003610296,0.0001112223,0.000149032,0.0003664393,0.000159503,0.0001067786,0.0001552172,0.000156422,0.000212807],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001347746,"about_ca_system_score_gemma":0.00006667511,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005847168,"about_ca_topic_score_gemma":0.001089431,"domain_scores_codex":[0.9999061,0.0000169885,0.000007495647,0.00002529793,0.00002363743,0.00002053597],"domain_scores_gemma":[0.9997749,0.0001038102,0.00003201407,0.0000220368,0.00003518151,0.00003201939],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007893206,0.00004119648,0.2412822,0.0001076025,0.0000831163,0.0005295555,0.00009175593,0.0007457588,0.7406964,0.0001104112,0.0004838544,0.01503893],"study_design_scores_gemma":[0.00004169454,0.0002475672,0.854481,0.00002019792,0.000125864,0.001487338,0.0002254316,0.008454083,0.1320823,0.0003001496,0.002522834,0.00001157153],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958094,0.0006350427,0.002563145,0.00004488066,0.000004217766,0.000008098647,0.0006247696,0.00005927553,0.0002510532],"genre_scores_gemma":[0.9974131,0.0001363242,0.001458728,0.00002773112,0.00000448117,0.000007465644,0.0007183671,0.000007230591,0.0002266278],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001298991,"threshold_uncertainty_score":0.004345596,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02189937937324199,"score_gpt":0.2281966931849598,"score_spread":0.2062973138117178,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}