{"id":"W2558766793","doi":"10.4315/0362-028x.jfp-16-220","title":"Genomic Tools for Customized Recovery and Detection of Foodborne Shiga Toxigenic Escherichia coli","year":2016,"lang":"en","type":"article","venue":"Journal of Food Protection","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":false,"ca_institutions":"Canadian Food Inspection Agency","funders":"National Research Council Canada; Public Health Agency; Government of Canada","keywords":"Escherichia coli; Biology; Antibiotic resistance; Microbiology; Food microbiology; Bacteria; Gene; Genetics; Antibiotics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007700407,0.0008311476,0.0008627324,0.001322555,0.0002796118,0.0009665872,0.0009248473,0.0008813277,0.003443327],"category_scores_gemma":[0.002607388,0.000754708,0.0008041959,0.0006131451,0.0003414084,0.0006779336,0.001285987,0.001454264,0.002197071],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000246945,"about_ca_system_score_gemma":0.0003733886,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005094832,"about_ca_topic_score_gemma":0.001156026,"domain_scores_codex":[0.9990779,0.0001462228,0.00006821908,0.0002320782,0.0003384652,0.0001370237],"domain_scores_gemma":[0.9990429,0.000360184,0.0001924127,0.0001927537,0.0001185024,0.00009317877],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001487068,0.0001476005,0.0009221779,0.0001392193,0.00002297527,0.0001301645,0.00007705038,0.0005250655,0.9734752,0.0004512447,0.0009120503,0.02304859],"study_design_scores_gemma":[0.00006871272,0.0005029952,0.006161279,0.00006991324,0.0001272755,0.0005560232,0.0001685442,0.006703433,0.9716219,0.001130386,0.01283026,0.00005933674],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.4555277,0.002279452,0.5027919,0.00152242,0.0003748286,0.00113204,0.01144283,0.01778916,0.007139736],"genre_scores_gemma":[0.5659,0.001688301,0.4033374,0.001199751,0.0001311975,0.0007292304,0.01956531,0.001649868,0.0057989],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.003443327,"threshold_uncertainty_score":0.01151907,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04253558920391193,"score_gpt":0.2265283518983948,"score_spread":0.1839927626944829,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}