{"id":"W2559140010","doi":"10.1371/journal.pone.0163818","title":"Molecular Typing of Legionella pneumophila Isolates in the Province of Quebec from 2005 to 2015","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Université de Montréal; Centre Hospitalier de l’Université de Montréal; Université Laval; Institut National de Santé Publique du Québec","funders":"Pfizer","keywords":"Outbreak; Legionella; Molecular epidemiology; Legionnaires' disease; Typing; UPGMA; Cluster (spacecraft); Legionella pneumophila; Incidence (geometry); Multilocus sequence typing; Biology; Veterinary medicine; Dendrogram; Microbiology; Geography; Medicine; Virology; Environmental health; Population; Genotype; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000174662,0.00008515841,0.0001498514,0.00004728256,0.00001529999,0.000006249458,0.0003071309,0.00007609017,0.000007237508],"category_scores_gemma":[0.0001024084,0.00005309727,0.00004268148,0.00008286726,0.00007798865,0.000003934131,0.0001078432,0.00005432439,0.00001276254],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001183412,"about_ca_system_score_gemma":0.000109355,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009409359,"about_ca_topic_score_gemma":0.001198375,"domain_scores_codex":[0.9991744,0.00007013802,0.0001882871,0.0002064614,0.0001672885,0.0001934052],"domain_scores_gemma":[0.9994159,0.00003705023,0.00005973045,0.0003606557,0.00008049852,0.0000461758],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008371055,0.0002949361,0.002558616,0.00002430266,0.00005188854,0.000003858804,0.00005813507,0.000006575089,0.9959713,0.0000665288,0.0005859641,0.0002941656],"study_design_scores_gemma":[0.0003000487,0.0001351938,0.001878996,0.0001537876,0.0000133426,5.034502e-7,0.00004560371,0.00001626635,0.9965109,0.0001178625,0.0007419287,0.00008551629],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954281,0.0006602911,0.0001976515,0.003121293,0.000009405558,0.0002378825,0.00002502329,0.000002647912,0.0003177222],"genre_scores_gemma":[0.9987948,0.0001785724,0.0002277093,0.0001484921,0.00007031478,0.0000144412,0.0000106914,0.000011824,0.000543188],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003366684,"threshold_uncertainty_score":0.2165244,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02056738266717012,"score_gpt":0.2494660259978899,"score_spread":0.2288986433307197,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}