{"id":"W2559140010","doi":"10.1371/journal.pone.0163818","title":"Molecular Typing of Legionella pneumophila Isolates in the Province of Quebec from 2005 to 2015","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Legionella and Acanthamoeba research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":27,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Université de Montréal; Centre Hospitalier de l’Université de Montréal; Université Laval; Institut National de Santé Publique du Québec","funders":"Pfizer","keywords":"Outbreak; Legionella; Molecular epidemiology; Legionnaires' disease; Typing; UPGMA; Cluster (spacecraft); Legionella pneumophila; Incidence (geometry); Multilocus sequence typing; Biology; Veterinary medicine; Dendrogram; Microbiology; Geography; Medicine; Virology; Environmental health; Population; Genotype; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004344534,0.0002840282,0.0002754865,0.001955365,0.001392224,0.000892702,0.0004541721,0.0002677625,0.0009949522],"category_scores_gemma":[0.00106044,0.0001371148,0.0002568989,0.003100722,0.0003256099,0.0002162589,0.0002545619,0.0003015777,0.000125051],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0117128,"about_ca_system_score_gemma":0.00764084,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9791628,"about_ca_topic_score_gemma":0.9862118,"domain_scores_codex":[0.9995711,0.00002295254,0.00002612343,0.00009423229,0.0001704259,0.0001151566],"domain_scores_gemma":[0.9985352,0.00005888441,0.0001979616,0.00002359672,0.001005719,0.000178708],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001951259,0.00006121463,0.9583224,0.0001469997,0.0001012259,0.000529308,0.001131159,0.0008672131,0.01060796,0.00009379332,0.003364108,0.0245795],"study_design_scores_gemma":[0.000002892916,0.00003554327,0.9945873,0.00003469109,0.00001915663,0.0001231912,0.0005224829,0.0006181223,0.0005654101,0.00000738463,0.003475331,0.000008451869],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9882004,0.001550068,0.0004301373,0.0002028415,0.00002395841,0.00006765161,0.00697338,0.00002737361,0.002524203],"genre_scores_gemma":[0.9903011,0.0007700459,0.0008612368,0.0001297893,0.000009451722,0.00002346091,0.005232116,0.000006573235,0.002666208],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02083719,"threshold_uncertainty_score":0.08498275,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02056738266717012,"score_gpt":0.2494660259978899,"score_spread":0.2288986433307197,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}