{"id":"W2559630315","doi":"10.3389/fpls.2016.01784","title":"Comparative Transcriptomic Analysis of Virulence Factors in Leptosphaeria maculans during Compatible and Incompatible Interactions with Canola","year":2016,"lang":"en","type":"article","venue":"Frontiers in Plant Science","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":52,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Manitoba; Université Laval","funders":"Agriculture and Agri-Food Canada; Saskatchewan Canola Development Commission; Université Laval","keywords":"Leptosphaeria maculans; Biology; Blackleg; Canola; Effector; Transcriptome; Genetics; Gene; Virulence; Fungus; Brassica; Mycosphaerella graminicola; RNA-Seq; Computational biology; Gene expression; Botany; Cell biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001666737,0.0001183335,0.0003377602,0.0002756705,0.0001596785,0.00003579862,0.0002865228,0.00002417153,0.00005336477],"category_scores_gemma":[0.00001279407,0.00004368308,0.00003289845,0.001784068,0.000363095,0.0005519814,0.00003831373,0.0001105875,7.105905e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001080851,"about_ca_system_score_gemma":0.00002390305,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004168109,"about_ca_topic_score_gemma":0.03683959,"domain_scores_codex":[0.9990166,0.00005394137,0.0002472736,0.000275539,0.000155806,0.0002508457],"domain_scores_gemma":[0.9995995,0.0001251255,0.0001106454,0.00006357604,0.00003863963,0.00006250672],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00005514667,0.0000428707,0.5474267,0.000001875244,0.00002005286,0.000001541279,0.0004706451,0.00006878191,0.4517066,0.000007630551,0.0000163731,0.0001817842],"study_design_scores_gemma":[0.0001758889,0.0000602534,0.9140669,0.0001140618,0.00002255606,0.00000591647,0.001824537,0.00158444,0.08192958,0.00001153385,0.00008643095,0.000117926],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989651,0.00003248136,0.0001175142,0.00005614421,0.0001347319,0.0001120159,0.0004330051,0.00001091366,0.0001380367],"genre_scores_gemma":[0.9995674,0.00005114099,0.0003095957,0.000007071569,0.000003573158,0.000005603277,0.00002264192,4.493156e-7,0.00003256413],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.369777,"threshold_uncertainty_score":0.9807356,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01783109866336547,"score_gpt":0.2309656849478194,"score_spread":0.213134586284454,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}