{"id":"W2559877391","doi":"10.1186/s12864-016-3337-3","title":"Ty1-copia elements reveal diverse insertion sites linked to polymorphisms among flax (Linum usitatissimum L.) accessions","year":2016,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Innovates; Institut National de la Recherche Agronomique; Agence Nationale de la Recherche; University of Alberta; Alberta Innovates - Technology Futures; Genome Canada","keywords":"Biology; Retrotransposon; Linum; Transposable element; Genetics; Gene; Genome; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001573476,0.0002883611,0.0001998501,0.001133999,0.0001907231,0.0002033845,0.0001368731,0.0002655046,0.0009322544],"category_scores_gemma":[0.0002304109,0.0001217211,0.0002386427,0.0005992068,0.0001707031,0.0001282205,0.0001706032,0.0002885971,0.0002173829],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001776562,"about_ca_system_score_gemma":0.00007175707,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009254483,"about_ca_topic_score_gemma":0.00148044,"domain_scores_codex":[0.9998645,0.00001327966,0.00001296479,0.00006635267,0.0000210159,0.00002193013],"domain_scores_gemma":[0.999624,0.00009887508,0.0001683894,0.00002489212,0.00003744459,0.00004636683],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002748467,0.00002503915,0.02836227,0.00005194793,0.00003199427,0.00005834972,0.0001673822,0.00008623546,0.9660476,0.0000267406,0.00002141859,0.004846133],"study_design_scores_gemma":[0.00001272201,0.0003173243,0.8845476,0.00001723405,0.00009132101,0.0009458574,0.0001759082,0.0008338092,0.1120546,0.00006226145,0.0009274474,0.0000140692],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974989,0.000265108,0.001070394,0.00001046249,0.000001436364,0.00001244553,0.0008224552,0.00002824535,0.0002904544],"genre_scores_gemma":[0.9962708,0.00009038729,0.001719355,0.0000162211,0.000002912308,0.00002843539,0.001365738,0.00001209974,0.000493973],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001133999,"threshold_uncertainty_score":0.003118694,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03821904694343919,"score_gpt":0.2485346625747989,"score_spread":0.2103156156313597,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}