{"id":"W2560606111","doi":"10.1016/j.jbiotec.2016.12.006","title":"MinION as part of a biomedical rapidly deployable laboratory","year":2016,"lang":"en","type":"article","venue":"Journal of Biotechnology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":52,"is_retracted":false,"has_abstract":false,"ca_institutions":"Defence Research and Development Canada","funders":"","keywords":"Minion; Nanopore sequencing; Computer science; Turnaround time; Software deployment; Identification (biology); Metagenomics; Barcode; DNA sequencing; Computational biology; Biology; Software engineering; Operating system; Ecology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004410678,0.00008823653,0.0002204542,0.0001606565,0.00002305374,0.000004242025,0.0002914352,0.0004765075,0.0001246492],"category_scores_gemma":[0.0005072488,0.00005517565,0.00009496191,0.0001625299,0.0003699469,0.000004644848,0.00009704509,0.0001277134,0.00001580311],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001510862,"about_ca_system_score_gemma":0.0002407677,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000003325546,"about_ca_topic_score_gemma":0.000003200256,"domain_scores_codex":[0.9990279,0.00005555537,0.0003789492,0.0001382375,0.000181615,0.0002177293],"domain_scores_gemma":[0.9991922,0.00002369394,0.0002534828,0.000240225,0.000194121,0.00009625418],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002796097,0.00008546481,0.0002380215,0.000008435602,0.00005769832,0.00001473371,0.00000501586,5.120764e-8,0.9566412,0.0001462749,0.006442918,0.03608059],"study_design_scores_gemma":[0.0006814729,0.001295239,0.0001512282,0.00002941771,0.000006748001,0.00007029919,0.00001335036,2.410368e-7,0.6957535,0.000128815,0.301819,0.00005073223],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933517,0.001214756,0.001801945,0.003063511,0.0003850223,0.00005375575,0.00002461948,0.000006092655,0.00009860918],"genre_scores_gemma":[0.996218,0.002670507,0.0005188175,0.00007418942,0.0003097442,0.000001550338,0.000002007318,0.00001301762,0.0001921852],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2953761,"threshold_uncertainty_score":0.3675262,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007302138732107633,"score_gpt":0.250892054942079,"score_spread":0.2435899162099714,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}