{"id":"W2560754340","doi":"10.1128/jcm.01954-16","title":"Field Validation of SYBR Green- and TaqMan-Based Real-Time PCR Using Biopsy and Swab Samples To Diagnose American Tegumentary Leishmaniasis in an Area Where Leishmania (Viannia) braziliensis Is Endemic","year":2016,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":60,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"TaqMan; Leishmania braziliensis; Leishmaniasis; Biology; Leishmania; Virology; Cutaneous leishmaniasis; Polymerase chain reaction; Real-time polymerase chain reaction; Microbiology; Parasite hosting; Immunology; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001702377,0.0002558106,0.001500827,0.0004794471,0.0000618891,0.00001811174,0.0002118524,0.0002280636,0.000181494],"category_scores_gemma":[0.002152658,0.0001760034,0.0001961779,0.0002807431,0.0007136955,0.0002025326,0.0001656917,0.0003940475,0.000004477581],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001005951,"about_ca_system_score_gemma":0.0002037242,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009915616,"about_ca_topic_score_gemma":0.0004499323,"domain_scores_codex":[0.9966202,0.0005965747,0.001718407,0.0004796431,0.0001678927,0.0004172543],"domain_scores_gemma":[0.9943919,0.003554,0.0009148793,0.0003377724,0.0004431815,0.0003582796],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001446439,0.0002597043,0.610936,0.00005220439,0.0001429572,0.0000690271,0.0001333201,0.00000138342,0.3591534,0.000001890208,0.001263321,0.02654033],"study_design_scores_gemma":[0.007723555,0.01401537,0.9150644,0.001726848,0.0003826216,0.0009092873,0.00071278,0.0000836469,0.0568094,0.0001403369,0.001963524,0.0004682522],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9875718,0.0003242613,0.0001261624,0.01143827,0.0001009081,0.0003282426,0.00007664816,0.00001093219,0.00002281293],"genre_scores_gemma":[0.9904448,0.002188962,0.005689782,0.001394194,0.0002067232,0.000004225376,0.000006503953,0.00002815705,0.00003668839],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3041284,"threshold_uncertainty_score":0.7177211,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07121479812846346,"score_gpt":0.393470640548998,"score_spread":0.3222558424205345,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}