{"id":"W2561152492","doi":"10.1111/1462-2920.13652","title":"The molecular response of the white‐rot fungus <scp> <i>D</i> </scp> <i>ichomitus squalens</i> to wood and non‐woody biomass as examined by transcriptome and exoproteome analyses","year":2016,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Fermentation and Sensory Analysis","field":"Agricultural and Biological Sciences","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"Concordia University","funders":"Stichting voor de Technische Wetenschappen; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Suomen Kulttuurirahasto; Genome Canada","keywords":"Biology; Fungus; Biomass (ecology); Lignin; Botany; Transcriptome; Polysaccharide; Ecology; Gene; Gene expression; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002724078,0.0001948395,0.0002292759,0.00001903385,0.0002579183,0.00002603732,0.0002496679,0.0001078803,0.00008530491],"category_scores_gemma":[0.00006147961,0.00005953889,0.00010575,0.0001509443,0.0005134817,0.00004882141,0.0001198264,0.00006573606,0.00002537372],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002707992,"about_ca_system_score_gemma":0.0000032231,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002740139,"about_ca_topic_score_gemma":0.00003423993,"domain_scores_codex":[0.9984919,0.0004726984,0.0002751971,0.0003850408,0.00008594996,0.0002892519],"domain_scores_gemma":[0.9991758,0.0004650886,0.0001154667,0.0001298076,0.000006154442,0.0001076737],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001121478,0.00005195818,0.004123676,0.000001671315,0.00005752271,0.00000206151,0.0002404056,4.455514e-7,0.9936705,0.000003538437,0.0004923904,0.001243642],"study_design_scores_gemma":[0.0004333894,0.0004733043,0.1192181,0.000008510837,0.00004552878,0.00003092795,0.001438285,7.01225e-7,0.857865,0.00002455515,0.02037087,0.00009083994],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955263,0.000719669,0.000008920536,0.00296084,0.00004695777,0.000339902,0.0003403843,0.00001072804,0.00004631579],"genre_scores_gemma":[0.9967546,0.0001734278,0.00001980865,0.0009608574,0.00001394756,0.00002379595,0.00002503137,0.00000247589,0.002026029],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1358055,"threshold_uncertainty_score":0.2427925,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007991548380926992,"score_gpt":0.2049880251000127,"score_spread":0.1969964767190857,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}