{"id":"W2561772980","doi":"10.1158/1538-7445.transcagen-a2-38","title":"Abstract A2-38: Interpretation and classification system for somatic variants identified in solid tumor molecular profiling","year":2015,"lang":"en","type":"article","venue":"Cancer Research","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University Health Network","funders":"","keywords":"Germline; Computational biology; Somatic cell; Germline mutation; In silico; Biology; Genetics; Bioinformatics; Gene; Mutation","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0216457,0.001449492,0.001294739,0.01908179,0.001816168,0.004447643,0.001896741,0.001337877,0.01169352],"category_scores_gemma":[0.06470579,0.0005040853,0.002118675,0.005970358,0.0009668777,0.00212356,0.00247898,0.001248985,0.005528811],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001880542,"about_ca_system_score_gemma":0.004943269,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006524016,"about_ca_topic_score_gemma":0.006056247,"domain_scores_codex":[0.9844281,0.00364637,0.006517689,0.001532722,0.003371878,0.0005032725],"domain_scores_gemma":[0.9368047,0.02296228,0.006645705,0.003225303,0.0282216,0.0021404],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003448874,0.0004828445,0.3097795,0.005600094,0.0008664645,0.001614718,0.002245216,0.005327044,0.0277776,0.007714403,0.102645,0.5324982],"study_design_scores_gemma":[0.001360273,0.00309752,0.4156697,0.006485452,0.003166823,0.00714709,0.004332067,0.1633812,0.05881537,0.03910641,0.2964605,0.000977539],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.256609,0.005213067,0.5221633,0.008722422,0.001674541,0.02296177,0.09619869,0.02854544,0.05791173],"genre_scores_gemma":[0.2172891,0.0009060599,0.7379231,0.0007910396,0.0002796925,0.00573383,0.03144205,0.0006483762,0.004986827],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.0216457,"threshold_uncertainty_score":0.1144748,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07298437890072526,"score_gpt":0.3983998149026422,"score_spread":0.3254154360019169,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}