{"id":"W2562411181","doi":"10.1128/genomea.01375-16","title":"Complete Genome Sequence of Dehalococcoides mccartyi Strain WBC-2, Capable of Anaerobic Reductive Dechlorination of Vinyl Chloride","year":2016,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Ontario Genomics Institute; Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Research, Innovation and Science; Government of Canada; U.S. Department of Defense","keywords":"Vinyl chloride; Bioaugmentation; Strain (injury); Whole genome sequencing; Biology; Dehalococcoides; Genome; Reductive dechlorination; Metagenomics; Microbiology; Gene; Genetics; Bioremediation; Ecology; Bacteria; Chemistry; Contamination","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002918411,0.0001839445,0.0003201818,0.00008576683,0.00005388035,0.000003923299,0.000283932,0.00007761944,0.00002630009],"category_scores_gemma":[0.0000449382,0.000154462,0.000101778,0.000139554,0.0003001287,0.00000432203,0.0001648203,0.00003123246,0.00000323613],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004205098,"about_ca_system_score_gemma":0.0001027519,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008900985,"about_ca_topic_score_gemma":0.00002547953,"domain_scores_codex":[0.9986516,0.00004447254,0.0004923361,0.0003380131,0.0002035845,0.0002699974],"domain_scores_gemma":[0.9987044,0.00001636525,0.0003937554,0.0004005849,0.0004333888,0.00005146624],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009036251,0.00007226499,0.002072165,0.00005413287,0.0002211145,5.768942e-7,0.0002657132,0.0001125308,0.9962175,0.0001928661,0.00001122361,0.0006895813],"study_design_scores_gemma":[0.001310908,0.001282512,0.06394655,0.00005649369,0.00006858327,0.000005024424,0.0005061946,0.000004244817,0.9151971,0.0008233552,0.01646009,0.0003389611],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943704,0.000913339,0.0006177496,0.0000372537,0.0001352279,0.0002985101,0.003110302,0.0000021108,0.0005151173],"genre_scores_gemma":[0.9973528,0.0009092669,0.001067995,0.00001955646,0.00007253003,0.00002582731,0.0002137559,0.00001681874,0.0003214004],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08102038,"threshold_uncertainty_score":0.6298777,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0309806463039537,"score_gpt":0.2558011601655891,"score_spread":0.2248205138616354,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}