{"id":"W2563952765","doi":"10.1128/genomea.01442-16","title":"Draft Whole-Genome Sequence of a Catalase-Negative Staphylococcus aureus subsp. <i>aureus</i> (Sequence Type 25) Strain Isolated from a Patient with Endocarditis and Septic Arthritis","year":2016,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada; Provincial Laboratory of Public Health; Canadian Science Centre for Human and Animal Health; Université de Saint-Boniface; University of Alberta","funders":"","keywords":"Staphylococcus aureus; Whole genome sequencing; Biology; Microbiology; Catalase; Missense mutation; Strain (injury); Gene; Genome; Bacteria; Mutation; Genetics; Enzyme","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001901377,0.0005586268,0.0008904751,0.0002047707,0.0001717206,0.00005417293,0.000295798,0.0001748152,0.0002795881],"category_scores_gemma":[0.0001502584,0.0004249779,0.0001213069,0.0006410613,0.0008746362,0.0003502151,0.0001634035,0.0002781182,0.0001122663],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003877018,"about_ca_system_score_gemma":0.0005369612,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004888207,"about_ca_topic_score_gemma":0.0002424585,"domain_scores_codex":[0.9964716,0.0001229315,0.0007940552,0.0009811086,0.0007894437,0.0008408858],"domain_scores_gemma":[0.9973755,0.0001573362,0.000515682,0.0008496371,0.0007185253,0.0003832436],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0008118034,0.0001779753,0.006191228,0.00009172127,0.0005024958,0.000856656,0.001783707,0.00001053291,0.984956,0.00001931909,0.0002712391,0.004327349],"study_design_scores_gemma":[0.07601811,0.05227394,0.2460151,0.02206819,0.00324539,0.001098875,0.01025394,0.000184918,0.182313,0.004287392,0.3915589,0.01068219],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9668211,0.002145434,0.0008090084,0.0003150383,0.0001720925,0.001584014,0.02754777,0.00008818622,0.0005173603],"genre_scores_gemma":[0.994584,0.001296257,0.001583381,0.0005218223,0.00009487369,0.00008225968,0.001341354,0.00007739388,0.0004186064],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8026429,"threshold_uncertainty_score":0.9998202,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01794438611923069,"score_gpt":0.2459682934364159,"score_spread":0.2280239073171852,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}