{"id":"W2564144087","doi":"10.1038/nmicrobiol.2016.240","title":"Origins of pandemic Vibrio cholerae from environmental gene pools","year":2016,"lang":"en","type":"article","venue":"Nature Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Virulence; Vibrio cholerae; Biology; Gene; Genetics; Allele; Population; Microbiology; Host (biology); Colonization; Vibrio; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009004188,0.0001801695,0.0002499086,0.00004183915,0.0000410104,0.000004412987,0.0002886864,0.0005608714,0.0001992159],"category_scores_gemma":[0.00007639628,0.0001201345,0.0001044207,0.00003498241,0.0003024598,0.0000034758,0.0002982304,0.0001872515,0.00005249161],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001076055,"about_ca_system_score_gemma":0.00004954967,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002875529,"about_ca_topic_score_gemma":0.00003514695,"domain_scores_codex":[0.9988928,0.00009270608,0.000204467,0.000436913,0.00004990412,0.0003231638],"domain_scores_gemma":[0.9994126,0.00003943062,0.00009343824,0.0003704936,0.00002832519,0.00005572262],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001417791,0.00003811103,0.01934547,0.000002829571,0.0001627399,0.000002440253,0.00001363995,1.617048e-7,0.9767648,0.00002111558,0.00182398,0.001682932],"study_design_scores_gemma":[0.0007957569,0.0001525844,0.02004524,0.000008953205,0.0000106546,0.00002081868,0.000006096866,8.418601e-8,0.769406,0.00002038546,0.2094067,0.0001267033],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940288,0.003587187,0.0001364611,0.0002427961,0.0002492046,0.0001491727,0.001522069,0.00001120468,0.00007311897],"genre_scores_gemma":[0.9966758,0.00123928,0.0005007575,0.00028458,0.000318538,0.00001119704,0.0005863181,0.0000200294,0.0003634498],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2075827,"threshold_uncertainty_score":0.4898943,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005313752091754492,"score_gpt":0.2406598539866327,"score_spread":0.2353461018948782,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}