{"id":"W2564144087","doi":"10.1038/nmicrobiol.2016.240","title":"Origins of pandemic Vibrio cholerae from environmental gene pools","year":2016,"lang":"en","type":"article","venue":"Nature Microbiology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":54,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Virulence; Vibrio cholerae; Biology; Gene; Genetics; Allele; Population; Microbiology; Host (biology); Colonization; Vibrio; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005191361,0.0003642632,0.0003687011,0.0005647189,0.0006426111,0.001461161,0.0005255864,0.0007604608,0.001437972],"category_scores_gemma":[0.001101188,0.0004761179,0.0002588646,0.000684262,0.0008302895,0.0009418022,0.001321463,0.001282244,0.0006100435],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001267524,"about_ca_system_score_gemma":0.0009630527,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002561369,"about_ca_topic_score_gemma":0.002955582,"domain_scores_codex":[0.9997508,0.00002422081,0.00001420834,0.00006033567,0.00004206958,0.0001084134],"domain_scores_gemma":[0.9994857,0.0001484114,0.00006053226,0.00009911099,0.0001091631,0.00009710321],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005066994,0.00007145556,0.02526857,0.0002273016,0.00003218157,0.001048311,0.00145862,0.001112744,0.9355879,0.01212383,0.0003509212,0.02221135],"study_design_scores_gemma":[0.0001924351,0.0007813455,0.4600569,0.0002958943,0.0001738677,0.003982269,0.01070581,0.005346009,0.444191,0.02825273,0.04584808,0.0001735914],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921235,0.0007527797,0.00195289,0.0003582436,0.00002753819,0.00002750574,0.0004045916,0.00002239236,0.004330451],"genre_scores_gemma":[0.9957188,0.0006110881,0.001475991,0.0001221769,0.00002464097,0.00002571769,0.00049641,0.00003077752,0.001494453],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002561369,"threshold_uncertainty_score":0.009196579,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005313752091754492,"score_gpt":0.2406598539866327,"score_spread":0.2353461018948782,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}