{"id":"W2564569826","doi":"10.1111/mmi.13602","title":"Functional relatedness in the Inv/Mxi‐Spa type III secretion system family","year":2016,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Effector; Type three secretion system; Complementation; Chaperone (clinical); Salmonella enterica; Secretion; Translocon; Cell biology; Genetics; Biogenesis; Protein-fragment complementation assay; Mutant; Salmonella; Gene; Biochemistry; Chromosomal translocation; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005140461,0.0001470893,0.0002129277,0.00001896271,0.00008399969,0.00001058306,0.0002797853,0.0002783167,0.0001271241],"category_scores_gemma":[0.00005317093,0.00004135266,0.00008403162,0.0002747407,0.0001164517,0.00003298041,0.00006160609,0.0001330396,0.0002532021],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005390481,"about_ca_system_score_gemma":0.000009977633,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001492497,"about_ca_topic_score_gemma":0.00008105229,"domain_scores_codex":[0.9983534,0.0006481866,0.0002720896,0.0003482044,0.00004639283,0.0003317486],"domain_scores_gemma":[0.9994367,0.0002824331,0.00008871502,0.0001000381,0.00005711999,0.00003496902],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006109292,0.00002169057,0.005269555,0.0000021893,0.00001184906,0.00002560048,0.00002603153,0.000002107788,0.9884436,0.002010192,0.00142277,0.002703362],"study_design_scores_gemma":[0.002781092,0.001918441,0.704394,0.0002554551,0.00009960033,0.001964154,0.002105629,0.00005874624,0.04064896,0.002671679,0.2416992,0.001403017],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955471,0.0004782631,0.0001486397,0.002310928,0.0004755765,0.0001729183,0.00001799284,0.00005030456,0.0007982827],"genre_scores_gemma":[0.9978081,0.00003424445,0.00001088024,0.001720661,0.0001092525,0.00001918205,0.000152926,0.00000133795,0.0001434383],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9477946,"threshold_uncertainty_score":0.3254485,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01892147936216307,"score_gpt":0.1971938202643733,"score_spread":0.1782723409022103,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}