{"id":"W2564878012","doi":"10.1158/1538-7445.panca16-a40","title":"Abstract A40: Gene expression profiling of pancreatic cancer precursors directly from formalin fixed paraffin embedded (FFPE) tissue without nucleic acid extraction","year":2016,"lang":"en","type":"article","venue":"Cancer Research","topic":"Pancreatic and Hepatic Oncology Research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ottawa Hospital","funders":"","keywords":"Pancreatic cancer; RNA; Gene expression profiling; RNA extraction; Gene expression; Nucleic acid; Cancer research; Pancreas; Biology; Tissue microarray; Pancreatic Intraepithelial Neoplasia; Adenocarcinoma; Microarray; Cancer; Gene; Pathology; Molecular biology; Medicine; Pancreatic ductal adenocarcinoma; Genetics; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003596497,0.0004023918,0.0003193144,0.0007037876,0.0005119875,0.0005647498,0.000357383,0.0004357913,0.006438782],"category_scores_gemma":[0.0003385602,0.0001933593,0.0002546782,0.0006332597,0.000221533,0.0002725836,0.0003207628,0.0005125866,0.003279858],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002504679,"about_ca_system_score_gemma":0.00047449,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007441161,"about_ca_topic_score_gemma":0.001717722,"domain_scores_codex":[0.999597,0.0000287582,0.00002697757,0.0001153496,0.000194458,0.00003754133],"domain_scores_gemma":[0.9997227,0.00006508756,0.00002980653,0.00002923917,0.0001044727,0.00004870442],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001594176,0.00002210272,0.0006721191,0.00005155289,0.000005812913,0.00007216004,0.00002170488,0.00004678347,0.9920748,0.00006240882,0.002037793,0.0047732],"study_design_scores_gemma":[0.00002452001,0.0004205626,0.02882837,0.00001808114,0.00003437559,0.0007690839,0.00005664718,0.001121081,0.9359211,0.0001651465,0.03261604,0.00002497162],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"other","genre_scores_codex":[0.821331,0.004910442,0.07982956,0.001546692,0.001375803,0.0007300189,0.05760743,0.004173185,0.02849583],"genre_scores_gemma":[0.5736907,0.00469448,0.1939673,0.002729273,0.0005041051,0.001542486,0.1357336,0.00151564,0.08562245],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.006438782,"threshold_uncertainty_score":0.02153993,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08603887391368814,"score_gpt":0.4470476502379163,"score_spread":0.3610087763242282,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}