{"id":"W2565146568","doi":"10.1094/pdis-11-16-1586-re","title":"Development and Validation of Polymorphic Microsatellite Loci for the NA2 Lineage of <i>Phytophthora ramorum</i> from Whole Genome Sequence Data","year":2016,"lang":"en","type":"article","venue":"Plant Disease","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; University of British Columbia; Canadian Food Inspection Agency","funders":"Canadian Food Inspection Agency","keywords":"Phytophthora ramorum; Biology; Microsatellite; Genetic diversity; Genetics; Population; Lineage (genetic); Genotyping; Multilocus sequence typing; Genotype; Phytophthora; Evolutionary biology; Allele; Botany; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001467486,0.0004797379,0.000451022,0.001134486,0.0005280786,0.0006749575,0.0007694135,0.0004973768,0.0006810348],"category_scores_gemma":[0.002524674,0.0003509547,0.0005214374,0.001242667,0.0002931771,0.0002487786,0.0004703404,0.0005170206,0.0006731863],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007859321,"about_ca_system_score_gemma":0.002555262,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.05207433,"about_ca_topic_score_gemma":0.1680756,"domain_scores_codex":[0.9990762,0.0001011857,0.00009331651,0.0002812255,0.0003499308,0.00009808852],"domain_scores_gemma":[0.9978966,0.0002663456,0.0005893372,0.000174558,0.0009132543,0.0001599401],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001456796,0.00006801368,0.02045051,0.0002027485,0.00005385541,0.000151761,0.0003857679,0.0006092485,0.9586604,0.000134966,0.0002011905,0.01893595],"study_design_scores_gemma":[0.0001447742,0.0008161795,0.5819163,0.0002069487,0.0003918183,0.001703015,0.0006901603,0.01212767,0.3774171,0.0001875275,0.02427985,0.0001186837],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9334481,0.00111099,0.04718914,0.0001484247,0.00003424936,0.001252107,0.01291392,0.0004526851,0.003450461],"genre_scores_gemma":[0.7343733,0.001028683,0.224568,0.0002787211,0.00001855642,0.0006865135,0.0352155,0.0001684034,0.003662267],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05207433,"threshold_uncertainty_score":0.1035424,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05806457446188231,"score_gpt":0.2338265679983285,"score_spread":0.1757619935364462,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}