{"id":"W2567489417","doi":"10.1093/bioinformatics/btw781","title":"AnglerFish: a webserver for defining the geometry of α-helices in membrane proteins","year":2016,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Machine Learning in Bioinformatics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council; Medical Research Council Canada; Pfizer","keywords":"Perl; Crystallography; Protein Data Bank (RCSB PDB); Helix (gastropod); Transmembrane protein; Orientation (vector space); Computer science; Membrane protein; Integral membrane protein; Protein structure; Transmembrane domain; Web server; Software; Computational biology; Biology; Membrane; Chemistry; Geometry; Biochemistry; Mathematics; Programming language; World Wide Web; The Internet","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001722819,0.003336576,0.00249681,0.002899427,0.0008168377,0.00274807,0.004998382,0.001862101,0.1256333],"category_scores_gemma":[0.005640205,0.001459278,0.002102353,0.003030975,0.0004365511,0.004438562,0.003803484,0.002503694,0.07615277],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007996755,"about_ca_system_score_gemma":0.001209355,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002253832,"about_ca_topic_score_gemma":0.003780992,"domain_scores_codex":[0.9989719,0.0001453049,0.0001133398,0.0002128434,0.000416012,0.0001406231],"domain_scores_gemma":[0.9982585,0.0007226692,0.0001718819,0.0003687334,0.0002660286,0.0002121952],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001437419,0.0001643308,0.003423148,0.002521944,0.0002278859,0.0006470543,0.0003193298,0.002206299,0.01697883,0.005910642,0.8865086,0.07965437],"study_design_scores_gemma":[0.001107485,0.0002840531,0.01137685,0.0008016148,0.0002212415,0.001699622,0.0002420557,0.03705244,0.03646621,0.01940472,0.8908855,0.0004582326],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.009694684,0.002048402,0.08467102,0.0003853781,0.00039427,0.000317428,0.2818198,0.6015924,0.01907669],"genre_scores_gemma":[0.05191794,0.002440141,0.1383783,0.0008376602,0.000186675,0.001484041,0.6341897,0.1532769,0.01728869],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.1256333,"threshold_uncertainty_score":0.4202852,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01002176826855092,"score_gpt":0.2489502281155556,"score_spread":0.2389284598470047,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}