{"id":"W2568124252","doi":"10.71781/31172","title":"Phylogenetic structural modeling of molecular evolution","year":2007,"lang":"en","type":"dissertation","venue":"Open MIND","topic":"Evolution and Paleontology Studies","field":"Earth and Planetary Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Phylogenetic tree; Evolutionary biology; Phylogenetics; Biology; Computational biology; Geography; Genetics; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001757858,0.0001527174,0.00026248,0.0001058698,0.0001062364,0.00002362465,0.0003157963,0.0001958854,0.002874577],"category_scores_gemma":[0.0000260874,0.0001376921,0.00006224024,0.0001267331,0.00004124788,0.00006579057,0.000008567044,0.0001431326,0.0001383025],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004966686,"about_ca_system_score_gemma":0.00009375814,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001900378,"about_ca_topic_score_gemma":0.1193251,"domain_scores_codex":[0.9990292,0.00004301938,0.0002893804,0.000259694,0.0001859753,0.0001927538],"domain_scores_gemma":[0.9995199,0.00002739284,0.000165281,0.000142591,0.00009612381,0.00004869425],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007496076,0.00002890108,0.4927651,0.000166256,0.0004532644,0.00005282904,0.003512934,0.08834878,0.001525575,0.00009828958,0.0001206914,0.4121777],"study_design_scores_gemma":[0.0005507095,0.0001856339,0.8875499,0.0001557559,0.0002210176,0.00001343262,0.003953233,0.1037069,0.001239457,0.001235818,0.0005944839,0.0005936825],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8437935,0.005023415,0.0001140278,0.000006995736,0.0004150386,0.0002061008,0.00005900922,9.210961e-7,0.150381],"genre_scores_gemma":[0.9943427,0.00003133775,0.002961691,0.00000785248,0.00003394053,5.864993e-7,0.0009922883,0.000002930694,0.001626671],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4115841,"threshold_uncertainty_score":0.9980369,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03252635014192518,"score_gpt":0.3126996462184646,"score_spread":0.2801732960765395,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}