{"id":"W2568859793","doi":"10.1093/database/baw160","title":"FirebrowseR: an R client to the Broad Institute’s Firehose Pipeline","year":2016,"lang":"en","type":"article","venue":"Database","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":224,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"","keywords":"Computer science; Workflow; Pipeline (software); Application programming interface; Web service; Software; Database; World Wide Web; Interface (matter); Software engineering; Task (project management); Service (business); Operating system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004851644,0.002329163,0.001922063,0.002236641,0.0009066966,0.002446587,0.005036505,0.001988621,0.05053107],"category_scores_gemma":[0.01131385,0.002238985,0.002673598,0.001243828,0.0008495091,0.002510104,0.004089608,0.003309329,0.05908253],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001149865,"about_ca_system_score_gemma":0.002059425,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005019363,"about_ca_topic_score_gemma":0.004901885,"domain_scores_codex":[0.9977647,0.0004494184,0.000164517,0.0006039208,0.0007598164,0.0002577044],"domain_scores_gemma":[0.9960458,0.001685569,0.000299398,0.00108063,0.000502105,0.0003864354],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002095077,0.0002165445,0.00379586,0.00106879,0.000532473,0.001305703,0.0005472532,0.00341791,0.02798356,0.006457955,0.8266711,0.1259078],"study_design_scores_gemma":[0.002169103,0.0003044074,0.01176162,0.0004721301,0.000355012,0.002499504,0.0002021525,0.1161476,0.1204772,0.03146928,0.7132581,0.0008838694],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.001742515,0.0002698185,0.1577221,0.000425487,0.0001236656,0.0002497937,0.01060407,0.8245672,0.004295442],"genre_scores_gemma":[0.06121062,0.0008401832,0.4394934,0.004061606,0.0002464616,0.002693275,0.08061177,0.3800536,0.03078914],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.05053107,"threshold_uncertainty_score":0.1690433,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01408169806154593,"score_gpt":0.2552758913824826,"score_spread":0.2411941933209366,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}