{"id":"W2568859793","doi":"10.1093/database/baw160","title":"FirebrowseR: an R client to the Broad Institute’s Firehose Pipeline","year":2016,"lang":"en","type":"article","venue":"Database","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":224,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Children's Hospital; University of Calgary","funders":"","keywords":"Computer science; Workflow; Pipeline (software); Application programming interface; Web service; Software; Database; World Wide Web; Interface (matter); Software engineering; Task (project management); Service (business); Operating system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002426885,0.0001220695,0.00007888664,0.0000177186,0.0001045653,0.00002536669,0.0003590561,0.00006058592,0.00005466482],"category_scores_gemma":[0.00005311024,0.00006648264,0.00004217533,0.00005792992,0.00005888888,0.00001221784,0.0002823525,0.00005164701,0.0002337969],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009444834,"about_ca_system_score_gemma":0.00004399308,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005290318,"about_ca_topic_score_gemma":0.0005554553,"domain_scores_codex":[0.9992206,0.0000237475,0.000189414,0.0002345252,0.00009526633,0.0002364425],"domain_scores_gemma":[0.9988702,0.000006966324,0.00004551971,0.0008810028,0.00003781503,0.0001584944],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001830095,0.0001453532,0.0004836209,0.00001540918,0.00003605768,0.000006852755,0.000144777,0.0001218223,0.1173448,0.001122413,0.5762122,0.3041836],"study_design_scores_gemma":[0.000385342,0.0001194635,0.0003044,0.00001973001,0.000008502373,0.000009910288,0.00002315962,0.0003625128,0.009955897,0.00003139675,0.9886195,0.0001601758],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8492385,0.0007701184,0.1356202,0.007630552,0.001414745,0.0007418809,0.002247005,0.00004768862,0.002289318],"genre_scores_gemma":[0.9874388,0.0002759806,0.00228529,0.005237132,0.001056523,0.0000371203,0.001515444,0.00002093628,0.002132772],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4124073,"threshold_uncertainty_score":0.3005064,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01408169806154593,"score_gpt":0.2552758913824826,"score_spread":0.2411941933209366,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}