{"id":"W2572612222","doi":"10.1186/s12863-017-0473-y","title":"Genetic diversity, extent of linkage disequilibrium and persistence of gametic phase in Canadian pigs","year":2017,"lang":"en","type":"article","venue":"BMC Genetics","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":73,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Armed Forces; University of Guelph","funders":"Agriculture and Agri-Food Canada; Swine Innovation Porc; Ministry of Agriculture - Saskatchewan; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","keywords":"Crossbreed; Breed; Purebred; Biology; Linkage disequilibrium; Genetic diversity; Herd; Population; Animal science; Veterinary medicine; Genetic variation; Single-nucleotide polymorphism; Genetics; Genotype; Demography; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006882371,0.0001743019,0.0002348575,0.001118516,0.001726532,0.0006911008,0.0005464316,0.0002563076,0.001633052],"category_scores_gemma":[0.0009656639,0.0001765351,0.0002291269,0.001556097,0.0007180065,0.0001487613,0.000352429,0.0002540195,0.0001202117],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.005900325,"about_ca_system_score_gemma":0.004877884,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9328215,"about_ca_topic_score_gemma":0.9721084,"domain_scores_codex":[0.9995875,0.00003110286,0.0000146773,0.0001301476,0.0001148644,0.000121785],"domain_scores_gemma":[0.9994538,0.0000812234,0.00008847764,0.00002910368,0.0002571015,0.00009014564],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000253302,0.00002633989,0.970565,0.00004608127,0.0001771882,0.0001950578,0.002042013,0.0004251016,0.009939778,0.0003102139,0.0003437224,0.01567625],"study_design_scores_gemma":[0.000003872867,0.00001661756,0.9987495,0.000005855851,0.00001927587,0.00005724165,0.0003232974,0.000180452,0.0001717509,0.00002787313,0.0004384471,0.000005746818],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986799,0.0001119516,0.0002317564,0.0000253916,0.000001236065,0.0000056849,0.0004255504,0.000004405789,0.0005141486],"genre_scores_gemma":[0.9986731,0.00008343245,0.0003525185,0.00001163753,9.337738e-7,0.000005063603,0.0003676616,0.000003309755,0.0005024066],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06717849,"threshold_uncertainty_score":0.1351482,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03090143335140638,"score_gpt":0.2659537984615786,"score_spread":0.2350523651101722,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}